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© IRL Press Limited

Visualization of nucleic acid sequence structural information

Kurt Stüber

Max-Planck-Institut für Zuchtungsforschung Egelspfad, D-500 Köln 30, FRG

Several interactive Pascal programs have been written for the analysis and display of structural information in nucleic acid sequences. Layout procedures were developed to display the homology and repeat matrices of a sequence and to predict and display the secondary structure of RNA/DNA molecules free of overlap and to predict and display internal repeats. No special plotting devices are required because the output is adapted to line printers. Sequences from several DNA database systems can be used as input. These programs are part of a general nucleic acid sequence analysis package.

Received on December 9, 1984; accepted on January 11, 1985

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