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© Oxford University Press

PROANAL version 2: multifunctional Program for analysis of multiple protein sequence alignments and for studying the structure-activity relationships in protein families

A.M. Eroshkin , V.I. Fomin , P.A. Zhilkin , V.V. lvanisenko and Y.V. Kondrakin

Research Institute of Molecular Biology NPO ‘Vector’ Koltsovo, Novosibirsk Region, 633159, Russia

A new version of the program PROANAL is described. A multiple linear regression analysis of the protein structure–activity relationship allows one to investigate the combina–tions of protein sites and factors influencing the activity. The program also provides the possibility to seek out protein sites, conservative or variable in variations of physico–chemical characteristics, and regions with high or low values of these characteristics. PROANAL2 may be useful in the simulation of protein–engineering experiments and in the search of a number of protein regions such as functional sites, secondary structures, solvent-exposed regions, T– and B–cell antigenic determinants, etc.

Received on May 12, 1994; accepted on October 10, 1994

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