Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Perrière, G.
Right arrow Articles by Thioulouse, J.
Right arrow Search for Related Content
PubMed
Right arrow Articles by Perrière, G.
Right arrow Articles by Thioulouse, J.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

© Oxford University Press

Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences

G. Perrière , J.R. Lobry 1 and J. Thioulouse

Laboratoire de Biométrie. Génétique et Biologie des Populations. UMR CNRS n 5558, Université Claude Bernard - Lyon 1. 43. bd. du 11 Novembre 1918. 69622 Villeurbanne Cedex. France

1To whom correspondence should be addressed E-mail: {perriere,lobry,thioulou}{at}biomservuniv-lyonl.fr

This report describes two applications of a multivariate method for studying classes of nucleotide or protein sequences: correspondence discriminant analysis (CDA). The first example is the discrimination between Escherichia coli proteins according to their subcellular location (membrane, cytoplasm and periplasm). The high resolution of the method made it possible to predict the subcellular location of E.coli proteins for whom this information is not known. The second example is discrimination between the coding sequences of leading and lagging strands in four bacteria: Mycoplasma genitalium, Haemophilus influenzae, E.coli and Bacillus subtilis. The programs used for computing the analysis are integrated in a publicly available package that runs on MacOS 7.x or Windows 95 operating systems (http://biomserv.univ-lyonl.fr/ADE-4.html). These programs are also accessible through our World Wide Web server (http://biomserv.univ-lyonl.fr/NetMul.html).

Received on May 2, 1996; accepted on July 8, 1996

Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Mol Biol EvolHome page
A. Necsulea and J. R. Lobry
A New Method for Assessing the Effect of Replication on DNA Base Composition Asymmetry
Mol. Biol. Evol., October 1, 2007; 24(10): 2169 - 2179.
[Abstract] [Full Text] [PDF]

Home page
 Mol Biol EvolHome page
E. P. C. Rocha and A. Danchin
Ongoing Evolution of Strand Composition in Bacterial Genomes
Mol. Biol. Evol., September 1, 2001; 18(9): 1789 - 1799.
[Abstract] [Full Text] [PDF]

Home page
 MicrobiologyHome page
B. Lafay, J. C. Atherton, and P. M. Sharp
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori
Microbiology, April 1, 2000; 146(4): 851 - 860.
[Abstract] [Full Text]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.