Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (29)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Worley, K. C.
Right arrow Articles by Smith, R. F.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Worley, K. C.
Right arrow Articles by Smith, R. F.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics, Vol 14, 890-891, Copyright © 1998 by Oxford University Press

ARTICLES

BEAUTY-X: enhanced BLAST searches for DNA queries

KC Worley, P Culpepper, BA Wiese and RF Smith
Human Genome Center, Department of Molecular and Human Genetics, Baylor College of Medicine, N-1519.08, One Baylor Plaza, Houston, TX 77030, USA. kworley,culpep@bcm.tmc.edu

SUMMARY: BEAUTY (BLAST Enhanced Alignment Utility) is an enhanced version of the BLAST database search tool that facilitates identification of the functions of matched sequences. Three recent improvements to the BEAUTY program described here make the enhanced output (1) available for DNA queries, (2) available for searches of any protein database, and (3) more up-to-date, with periodic updates of the domain information. AVAILABILITY: BEAUTY searches of the NCBI and EMBL non-redundant protein sequence databases are available from the BCM Search Launcher Web pages (http://gc.bcm.tmc. edu:8088/search- launcher/launcher.html). BEAUTY Post-Processing of submitted search results is available using the BCM Search Launcher Batch Client (version 2.6) (ftp://gc.bcm.tmc. edu/pub/software/search-launcher/). SUPPLEMENTARY INFORMATION: Example figures are available at http://dot.bcm.tmc. edu:9331/papers/beautypp.html CONTACT: kworley,culpep@bcm.tmc.edu
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 MicrobiologyHome page
C. I. Muglia, D. H. Grasso, and O. M. Aguilar
Rhizobium tropici response to acidity involves activation of glutathione synthesis
Microbiology, April 1, 2007; 153(4): 1286 - 1296.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
R. Daza-Vamenta, G. Glusman, L. Rowen, B. Guthrie, and D. E. Geraghty
Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex
Genome Res., August 1, 2004; 14(8): 1501 - 1515.
[Abstract] [Full Text] [PDF]

Home page
 Appl. Environ. Microbiol.Home page
I. Lacourt, S. Duplessis, S. Abba, P. Bonfante, and F. Martin
Isolation and Characterization of Differentially Expressed Genes in the Mycelium and Fruit Body of Tuber borchii
Appl. Envir. Microbiol., September 1, 2002; 68(9): 4574 - 4582.
[Abstract] [Full Text] [PDF]

Home page
 J Antimicrob ChemotherHome page
S. M. Wigfield, G. P. Rigg, M. Kavari, A. K. Webb, R. C. Matthews, and J. P. Burnie
Identification of an immunodominant drug efflux pump in Burkholderia cepacia
J. Antimicrob. Chemother., April 1, 2002; 49(4): 619 - 624.
[Abstract] [Full Text] [PDF]

Home page
 J. Bacteriol.Home page
S. W. Hutcheson, J. Bretz, T. Sussan, S. Jin, and K. Pak
Enhancer-Binding Proteins HrpR and HrpS Interact To Regulate hrp-Encoded Type III Protein Secretion in Pseudomonas syringae Strains
J. Bacteriol., October 1, 2001; 183(19): 5589 - 5598.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
C. M. Vera Cruz, J. Bai, I. Oña, H. Leung, R. J. Nelson, T.-W. Mew, and J. E. Leach
Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation
PNAS, November 22, 2000; (2000) 250271997.
[Abstract] [Full Text]

Home page
 J. Biol. Chem.Home page
M. Veale, M. Raab, Z. Li, A. J. da Silva, S.-K. Kraeft, S. Weremowicz, C. C. Morton, and C. E. Rudd
Novel Isoform of Lymphoid Adaptor FYN-T-binding Protein (FYB-130) Interacts with SLP-76 and Up-regulates Interleukin 2 Production
J. Biol. Chem., October 1, 1999; 274(40): 28427 - 28435.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
C. M. Vera Cruz, J. Bai, I. Ona, H. Leung, R. J. Nelson, T.-W. Mew, and J. E. Leach
Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation
PNAS, December 5, 2000; 97(25): 13500 - 13505.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.