Bioinformatics, Vol 14, 892-893, Copyright © 1998 by Oxford University Press
JA Cuff, ME Clamp, AS Siddiqui, M Finlay and GJ Barton
SUMMARY: An interactive protein secondary structure prediction Internet
server is presented. The server allows a single sequence or multiple
alignment to be submitted, and returns predictions from six secondary
structure prediction algorithms that exploit evolutionary information from
multiple sequences. A consensus prediction is also returned which improves
the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies
the use of current prediction algorithms and allows conservation patterns
important to structure and function to be identified. AVAILABILITY:
http://barton.ebi.ac.uk/servers/jpred.h tml CONTACT: geoff@ebi.ac.uk
ARTICLES
JPred: a consensus secondary structure prediction server
Laboratory of Molecular Biophysics, Rex Richards Building, South Parks Road, Oxford OX1 3QU, UK.
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  K. Mukherjee, L. Brocchieri, and T. R. Burglin A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes Mol. Biol. Evol., December 1, 2009; 26(12): 2775 - 2794. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Saha, K. H. Biswas, C. Kondapalli, N. Isloor, and S. S. Visweswariah The Linker Region in Receptor Guanylyl Cyclases Is a Key Regulatory Module: MUTATIONAL ANALYSIS OF GUANYLYL CYCLASE C J. Biol. Chem., October 2, 2009; 284(40): 27135 - 27145. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Candela, E. Biagi, M. Centanni, S. Turroni, M. Vici, F. Musiani, B. Vitali, S. Bergmann, S. Hammerschmidt, and P. Brigidi Bifidobacterial enolase, a cell surface receptor for human plasminogen involved in the interaction with the host Microbiology, October 1, 2009; 155(10): 3294 - 3303. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. C. Freundt, L. Yu, E. Park, M. J. Lenardo, and X.-N. Xu Molecular Determinants for Subcellular Localization of the Severe Acute Respiratory Syndrome Coronavirus Open Reading Frame 3b Protein J. Virol., July 1, 2009; 83(13): 6631 - 6640. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. D. Kouri, N. E. Labrou, S. D. Garbis, K. I. Kalliampakou, C. Stedel, M. Dimou, M. K. Udvardi, P. Katinakis, and E. Flemetakis Molecular and Biochemical Characterization of the Parvulin-Type PPIases in Lotus japonicus Plant Physiology, July 1, 2009; 150(3): 1160 - 1173. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Zubini, B. Zambelli, F. Musiani, S. Ciurli, P. Bertolini, and E. Baraldi The RNA Hydrolysis and the Cytokinin Binding Activities of PR-10 Proteins Are Differently Performed by Two Isoforms of the Pru p 1 Peach Major Allergen and Are Possibly Functionally Related Plant Physiology, July 1, 2009; 150(3): 1235 - 1247. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. C. Viertlboeck, S. Schweinsberg, R. Schmitt, F. W. Herberg, and T. W. Gobel The Chicken Leukocyte Receptor Complex Encodes a Family of Different Affinity FcY Receptors J. Immunol., June 1, 2009; 182(11): 6985 - 6992. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Dutta, K. Bandyopadhyay, A. B. Datta, A. A. Sardesai, and P. Parrack Properties of HflX, an Enigmatic Protein from Escherichia coli J. Bacteriol., April 1, 2009; 191(7): 2307 - 2314. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. G. Pell, V. Kanelis, L. W. Donaldson, P. Lynne Howell, and A. R. Davidson The phage {lambda} major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system PNAS, March 17, 2009; 106(11): 4160 - 4165. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. M. Parrott, S. A. Sitarski, R. J. Arnold, L. K. Picton, R. B. Hill, and S. Mukhopadhyay Role of Conserved Cysteines in the Alphavirus E3 Protein J. Virol., March 15, 2009; 83(6): 2584 - 2591. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Tagami, H. Motose, and Y. Watanabe A dominant mutation in DCL1 suppresses the hyl1 mutant phenotype by promoting the processing of miRNA RNA, March 1, 2009; 15(3): 450 - 458. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. M. Bakheet and A. J. Doig Properties and identification of human protein drug targets Bioinformatics, February 15, 2009; 25(4): 451 - 457. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. L. Schulz and M. Aebi Analysis of Glycosylation Site Occupancy Reveals a Role for Ost3p and Ost6p in Site-specific N-Glycosylation Efficiency Mol. Cell. Proteomics, February 1, 2009; 8(2): 357 - 364. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. C. Viertlboeck, R. Schmitt, M. A. Hanczaruk, R. P. M. A. Crooijmans, M. A. M. Groenen, and T. W. Gobel A Novel Activating Chicken IgY FcR Is Related to Leukocyte Receptor Complex (LRC) Genes but Is Located on a Chromosomal Region Distinct from the LRC and FcR Gene Clusters J. Immunol., February 1, 2009; 182(3): 1533 - 1540. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-R. Su, K. Takeda, S. Tamura, Y. Fujiki, and K. Miki Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p PNAS, January 13, 2009; 106(2): 417 - 421. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. F. Waller, C. Jabbour, N. C. Chan, N. Celik, V. A. Likic, T. D. Mulhern, and T. Lithgow Evidence of a Reduced and Modified Mitochondrial Protein Import Apparatus in Microsporidian Mitosomes Eukaryot. Cell, January 1, 2009; 8(1): 19 - 26. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. P. Swiercz, Hindra, J. Bobek, H. J. Haiser, C. Di Berardo, B. Tjaden, and M. A. Elliot Small non-coding RNAs in Streptomyces coelicolor Nucleic Acids Res., December 1, 2008; 36(22): 7240 - 7251. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. D. Muhlebach, V. H. J. Leonard, and R. Cattaneo The Measles Virus Fusion Protein Transmembrane Region Modulates Availability of an Active Glycoprotein Complex and Fusion Efficiency J. Virol., November 15, 2008; 82(22): 11437 - 11445. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Baljuls, W. Schmitz, T. Mueller, R. P. Zahedi, A. Sickmann, M. Hekman, and U. R. Rapp Positive Regulation of A-RAF by Phosphorylation of Isoform-specific Hinge Segment and Identification of Novel Phosphorylation Sites J. Biol. Chem., October 3, 2008; 283(40): 27239 - 27254. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Banos, J. M. Lazaro, L. Villar, M. Salas, and M. de Vega Editing of misaligned 3'-termini by an intrinsic 3'-5' exonuclease activity residing in the PHP domain of a family X DNA polymerase Nucleic Acids Res., October 1, 2008; 36(18): 5736 - 5749. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Sundstrom, R. L. White, A. de Parseval, K. J. Sastry, G. Morris, C. K. Grant, and J. H. Elder Mapping of the CXCR4 Binding Site within Variable Region 3 of the Feline Immunodeficiency Virus Surface Glycoprotein J. Virol., September 15, 2008; 82(18): 9134 - 9142. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Sakiyama, R. M. Wynn, W.-R. Lee, M. Fukasawa, H. Mizuguchi, K. H. Gardner, J. J. Repa, and K. Uyeda Regulation of Nuclear Import/Export of Carbohydrate Response Element-binding Protein (ChREBP): INTERACTION OF AN {alpha}-HELIX OF ChREBP WITH THE 14-3-3 PROTEINS AND REGULATION BY PHOSPHORYLATION J. Biol. Chem., September 5, 2008; 283(36): 24899 - 24908. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Savic, T. Ilic-Tomic, R. Macmaster, B. Vasiljevic, and G. L. Conn Critical Residues for Cofactor Binding and Catalytic Activity in the Aminoglycoside Resistance Methyltransferase Sgm J. Bacteriol., September 1, 2008; 190(17): 5855 - 5861. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. G. Grummitt, F. M. Townsley, C. M. Johnson, A. J. Warren, and M. Bycroft Structural Consequences of Nucleophosmin Mutations in Acute Myeloid Leukemia J. Biol. Chem., August 22, 2008; 283(34): 23326 - 23332. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. Zhu, J. O. Wrabl, A. P. Hayashi, L. S. Rose, and P. J. Thomas The Torsin-family AAA+ Protein OOC-5 Contains a Critical Disulfide Adjacent to Sensor-II That Couples Redox State to Nucleotide Binding Mol. Biol. Cell, August 1, 2008; 19(8): 3599 - 3612. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Sisakova, L. K. Stanley, M. Weiserova, and M. D. Szczelkun A RecB-family nuclease motif in the Type I restriction endonuclease EcoR124I Nucleic Acids Res., July 1, 2008; 36(12): 3939 - 3949. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Quan, Z.-L. Ji, X. Wang, A. M. Tartakoff, and T. Tao Evolutionary and Transcriptional Analysis of Karyopherin {beta} Superfamily Proteins Mol. Cell. Proteomics, July 1, 2008; 7(7): 1254 - 1269. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Cole, J. D. Barber, and G. J. Barton The Jpred 3 secondary structure prediction server Nucleic Acids Res., July 1, 2008; 36(suppl_2): W197 - W201. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Siroy, C. Mailaender, D. Harder, S. Koerber, F. Wolschendorf, O. Danilchanka, Y. Wang, C. Heinz, and M. Niederweis Rv1698 of Mycobacterium tuberculosis Represents a New Class of Channel-forming Outer Membrane Proteins J. Biol. Chem., June 27, 2008; 283(26): 17827 - 17837. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. M. Cartwright, E.-K. Lim, C. Kleanthous, and D. J. Bowles A Kinetic Analysis of Regiospecific Glucosylation by Two Glycosyltransferases of Arabidopsis thaliana: DOMAIN SWAPPING TO INTRODUCE NEW ACTIVITIES J. Biol. Chem., June 6, 2008; 283(23): 15724 - 15731. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 X. Gao, Y. Hou, H. Ebina, H. L. Levin, and D. F. Voytas Chromodomains direct integration of retrotransposons to heterochromatin Genome Res., March 1, 2008; 18(3): 359 - 369. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Gebhard and G. M. Cook Differential Regulation of High-Affinity Phosphate Transport Systems of Mycobacterium smegmatis: Identification of PhnF, a Repressor of the phnDCE Operon J. Bacteriol., February 15, 2008; 190(4): 1335 - 1343. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S.D. Dunn, L.M. Wahl, and G.B. Gloor Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction Bioinformatics, February 1, 2008; 24(3): 333 - 340. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Piontek, L. Winkler, H. Wolburg, S. L. Muller, N. Zuleger, C. Piehl, B. Wiesner, G. Krause, and I. E. Blasig Formation of tight junction: determinants of homophilic interaction between classic claudins FASEB J, January 1, 2008; 22(1): 146 - 158. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. W. Abbott, J. M. Eirin-Lopez, and A. B. Boraston Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate-Binding Modules Mol. Biol. Evol., January 1, 2008; 25(1): 155 - 167. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. J. Mankelow, N. Burton, F. O. Stefansdottir, F. A. Spring, S. F. Parsons, J. S. Pedersen, C. L. P. Oliveira, D. Lammie, T. Wess, N. Mohandas, et al. The Laminin 511/521 binding site on the Lutheran blood group glycoprotein is located at the flexible junction of Ig domains 2 and 3 Blood, November 1, 2007; 110(9): 3398 - 3406. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K.-F. Wong, J. M. Luk, R. H. Cheng, L. B. Klickstein, and S.-T. Fan Characterization of two novel LPS-binding sites in leukocyte integrin {beta}A domain FASEB J, October 1, 2007; 21(12): 3231 - 3239. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Balaji and L. Aravind The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins Nucleic Acids Res., September 27, 2007; 35(17): 5658 - 5671. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Y. Logunov, O. V. Zubkova, A. S. Karyagina-Zhulina, E. A. Shuvalova, A. P. Karpov, M. M. Shmarov, I. L. Tutykhina, Y. S. Alyapkina, N. M. Grezina, N. A. Zinovieva, et al. Identification of HI-Like Loop in CELO Adenovirus Fiber for Incorporation of Receptor Binding Motifs J. Virol., September 15, 2007; 81(18): 9641 - 9652. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. D. Lindenbach, B. M. Pragai, R. Montserret, R. K. F. Beran, A. M. Pyle, F. Penin, and C. M. Rice The C Terminus of Hepatitis C Virus NS4A Encodes an Electrostatic Switch That Regulates NS5A Hyperphosphorylation and Viral Replication J. Virol., September 1, 2007; 81(17): 8905 - 8918. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J.-K. Ko, K.-H. Choi, Z. Pan, P. Lin, N. Weisleder, C.-W. Kim, and J. Ma The tail-anchoring domain of Bfl1 and HCCS1 targets mitochondrial membrane permeability to induce apoptosis J. Cell Sci., August 15, 2007; 120(16): 2912 - 2923. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda, and T. Noguchi POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions Bioinformatics, August 15, 2007; 23(16): 2046 - 2053. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Casola, A. M. Lawing, E. Betran, and C. Feschotte PIF-like Transposons are Common in Drosophila and Have Been Repeatedly Domesticated to Generate New Host Genes Mol. Biol. Evol., August 1, 2007; 24(8): 1872 - 1888. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. C. Geething and J. A. Spudich Identification of a Minimal Myosin Va Binding Site within an Intrinsically Unstructured Domain of Melanophilin J. Biol. Chem., July 20, 2007; 282(29): 21518 - 21528. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Zhou, W.-P. Tzeng, W. Yang, Y. Zhou, Y. Ye, H.-w. Lee, T. K. Frey, and J. Yang Identification of a Ca2+-Binding Domain in the Rubella Virus Nonstructural Protease J. Virol., July 15, 2007; 81(14): 7517 - 7528. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Moretti, F. Armougom, I. M. Wallace, D. G. Higgins, C. V. Jongeneel, and C. Notredame The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods Nucleic Acids Res., July 13, 2007; 35(suppl_2): W645 - W648. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Klaiman, M. Amitsur, S. Blanga-Kanfi, M. Chai, D. R. Davis, and G. Kaufmann Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNALys recognition Nucleic Acids Res., July 9, 2007; 35(14): 4704 - 4714. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Ueguchi-Tanaka, M. Nakajima, E. Katoh, H. Ohmiya, K. Asano, S. Saji, X. Hongyu, M. Ashikari, H. Kitano, I. Yamaguchi, et al. Molecular Interactions of a Soluble Gibberellin Receptor, GID1, with a Rice DELLA Protein, SLR1, and Gibberellin PLANT CELL, July 1, 2007; 19(7): 2140 - 2155. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Mrosek, D. Labeit, S. Witt, H. Heerklotz, E. von Castelmur, S. Labeit, and O. Mayans Molecular determinants for the recruitment of the ubiquitin-ligase MuRF-1 onto M-line titin FASEB J, May 1, 2007; 21(7): 1383 - 1392. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. S. Almeida, M. A. Johnson, T. Herrmann, M. Geralt, and K. Wuthrich Novel {beta}-Barrel Fold in the Nuclear Magnetic Resonance Structure of the Replicase Nonstructural Protein 1 from the Severe Acute Respiratory Syndrome Coronavirus J. Virol., April 1, 2007; 81(7): 3151 - 3161. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Hwang, Z. Gou, and I. B. Kuznetsov DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins Bioinformatics, March 1, 2007; 23(5): 634 - 636. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Seidel, L. J. Alderwick, H. Sahm, G. S. Besra, and L. Eggeling Topology and mutational analysis of the single Emb arabinofuranosyltransferase of Corynebacterium glutamicum as a model of Emb proteins of Mycobacterium tuberculosis Glycobiology, February 1, 2007; 17(2): 210 - 219. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Luo, U. Schwarz-Linek, C. H. Botting, R. Hensel, B. Siebers, and M. F. White CC1, a Novel Crenarchaeal DNA Binding Protein J. Bacteriol., January 15, 2007; 189(2): 403 - 409. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Jayaram, K. Bhushan, S. R. Shenoy, P. Narang, S. Bose, P. Agrawal, D. Sahu, and V. Pandey Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins Nucleic Acids Res., December 4, 2006; 34(21): 6195 - 6204. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. M. Babu, L. M. Iyer, S. Balaji, and L. Aravind The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons Nucleic Acids Res., December 2, 2006; 34(22): 6505 - 6520. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. A. Frye, R. Assalkhou, R. F. Collins, R. C. Ford, C. Petersson, J. P. Derrick, and T. Tonjum Topology of the outer-membrane secretin PilQ from Neisseria meningitidis Microbiology, December 1, 2006; 152(12): 3751 - 3764. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Stitham, S. R. Gleim, K. Douville, E. Arehart, and J. Hwa Versatility and Differential Roles of Cysteine Residues in Human Prostacyclin Receptor Structure and Function J. Biol. Chem., December 1, 2006; 281(48): 37227 - 37236. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. D. Silva, L. Shen, V. Tcherepanov, C. Watson, and C. Upton Predicted function of the vaccinia virus G5R protein Bioinformatics, December 1, 2006; 22(23): 2846 - 2850. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Z. Birtle and C. P. Ponting Meisetz and the birth of the KRAB motif Bioinformatics, December 1, 2006; 22(23): 2841 - 2845. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Mackenzie, L. Pedersen, S. Arent, and A. Henriksen Controlling Electron Transfer in Acyl-CoA Oxidases and Dehydrogenases: A STRUCTURAL VIEW J. Biol. Chem., October 13, 2006; 281(41): 31012 - 31020. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. B. Kashlan, A. B. Maarouf, C. Kussius, R. M. Denshaw, K. M. Blumenthal, and T. R. Kleyman Distinct Structural Elements in the First Membrane-spanning Segment of the Epithelial Sodium Channel J. Biol. Chem., October 13, 2006; 281(41): 30455 - 30462. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. A. Hill, J. Broadhvest, R. K. Kuzoff, and C. S. Gasser Arabidopsis SHORT INTEGUMENTS 2 Is a Mitochondrial DAR GTPase Genetics, October 1, 2006; 174(2): 707 - 718. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Zhou, C. Y. Liu, S. H. Back, R. L. Clark, D. Peisach, Z. Xu, and R. J. Kaufman The crystal structure of human IRE1 luminal domain reveals a conserved dimerization interface required for activation of the unfolded protein response PNAS, September 26, 2006; 103(39): 14343 - 14348. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. R. Macdonald, P. Progias, B. Ciani, S. Patel, U. Mayer, M. O. Steinmetz, and R. A. Kammerer Structure of the Extracellular Domain of Tie Receptor Tyrosine Kinases and Localization of the Angiopoietin-binding Epitope J. Biol. Chem., September 22, 2006; 281(38): 28408 - 28414. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q.-y. He, X.-h. Liu, Q. Li, D. J. Studholme, X.-w. Li, and S.-p. Liang G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss Bioinformatics, September 15, 2006; 22(18): 2189 - 2191. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M.-P. Egloff, H. Malet, A. Putics, M. Heinonen, H. Dutartre, A. Frangeul, A. Gruez, V. Campanacci, C. Cambillau, J. Ziebuhr, et al. Structural and Functional Basis for ADP-Ribose and Poly(ADP-Ribose) Binding by Viral Macro Domains. J. Virol., September 1, 2006; 80(17): 8493 - 8502. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Stigloher, J. Ninkovic, M. Laplante, A. Geling, B. Tannhauser, S. Topp, H. Kikuta, T. S. Becker, C. Houart, and L. Bally-Cuif Segregation of telencephalic and eye-field identities inside the zebrafish forebrain territory is controlled by Rx3 Development, August 1, 2006; 133(15): 2925 - 2935. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. E. Ciocchini, M. S. Roset, G. Briones, N. I. de Iannino, and R. A. Ugalde Identification of active site residues of the inverting glycosyltransferase Cgs required for the synthesis of cyclic {beta}-1,2-glucan, a Brucella abortus virulence factor Glycobiology, July 1, 2006; 16(7): 679 - 691. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Behr, C. Hoffmann, G. Ottolina, and K.-N. Klotz Novel Mutants of the Human beta1-Adrenergic Receptor Reveal Amino Acids Relevant for Receptor Activation J. Biol. Chem., June 30, 2006; 281(26): 18120 - 18125. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. S. Makarova, E. V. Koonin, R. Haselkorn, and M. Y. Galperin Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion Bioinformatics, June 1, 2006; 22(11): 1297 - 1301. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. M. Sutherland, P. A. B. Moretti, N. M. Hewitt, C. J. Bagley, M. A. Vadas, and S. M. Pitson The Calmodulin-binding Site of Sphingosine Kinase and Its Role in Agonist-dependent Translocation of Sphingosine Kinase 1 to the Plasma Membrane J. Biol. Chem., April 28, 2006; 281(17): 11693 - 11701. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Lee, S. C. Murphy, M. Belshan, W. O. Sparks, Y. Wannemuehler, S. Liu, T. J. Hope, D. Dobbs, and S. Carpenter Characterization of Functional Domains of Equine Infectious Anemia Virus Rev Suggests a Bipartite RNA-Binding Domain. J. Virol., April 1, 2006; 80(8): 3844 - 3852. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 V Tiranti, E Briem, E Lamantea, R Mineri, E Papaleo, L D. Gioia, F Forlani, P Rinaldo, P Dickson, B Abu-Libdeh, et al. ETHE1 mutations are specific to ethylmalonic encephalopathy J. Med. Genet., April 1, 2006; 43(4): 340 - 346. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Gonzalez-Lamothe, D. I. Tsitsigiannis, A. A. Ludwig, M. Panicot, K. Shirasu, and J. D.G. Jones The U-Box Protein CMPG1 Is Required for Efficient Activation of Defense Mechanisms Triggered by Multiple Resistance Genes in Tobacco and Tomato PLANT CELL, April 1, 2006; 18(4): 1067 - 1083. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Mukherjee and T. R. Burglin MEKHLA, a Novel Domain with Similarity to PAS Domains, Is Fused to Plant Homeodomain-Leucine Zipper III Proteins. Plant Physiology, April 1, 2006; 140(4): 1142 - 1150. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. M. Wallace, O. O'Sullivan, D. G. Higgins, and C. Notredame M-Coffee: combining multiple sequence alignment methods with T-Coffee Nucleic Acids Res., March 23, 2006; 34(6): 1692 - 1699. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Ge, H. Hu, K. Ding, L. Sun, and S. Zheng Protein Interaction Analysis of ST14 Domains and Their Point and Deletion Mutants J. Biol. Chem., March 17, 2006; 281(11): 7406 - 7412. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. N. Amin, B. L. Taylor, and M. S. Johnson Topology and Boundaries of the Aerotaxis Receptor Aer in the Membrane of Escherichia coli J. Bacteriol., February 1, 2006; 188(3): 894 - 901. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. M. Chung, G. E. Nybakken, B. S. Thompson, M. J. Engle, A. Marri, D. H. Fremont, and M. S. Diamond Antibodies against West Nile Virus Nonstructural Protein NS1 Prevent Lethal Infection through Fc {gamma} Receptor-Dependent and -Independent Mechanisms J. Virol., February 1, 2006; 80(3): 1340 - 1351. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. M. Iyer, A. M. Burroughs, and L. Aravind The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism Bioinformatics, February 1, 2006; 22(3): 257 - 263. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Matsumoto, M. Murai, D. Fujita, K. Sakamoto, H. Miyoshi, M. Yoshida, and T. Mogi Mass Spectrometric Analysis of the Ubiquinol-binding Site in Cytochrome bd from Escherichia coli J. Biol. Chem., January 27, 2006; 281(4): 1905 - 1912. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Casali, A. M. White, and L. W. Riley Regulation of the Mycobacterium tuberculosis mce1 Operon J. Bacteriol., January 15, 2006; 188(2): 441 - 449. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Herzberg, I. K. Kaye, W. Peti, and T. K. Wood YdgG (TqsA) Controls Biofilm Formation in Escherichia coli K-12 through Autoinducer 2 Transport J. Bacteriol., January 15, 2006; 188(2): 587 - 598. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 N. Mononen, E. H. Seppala, P. Duggal, V. Autio, T. Ikonen, P. Ellonen, J. Saharinen, J. Saarela, M. Vihinen, T. L.J. Tammela, et al. Profiling Genetic Variation along the Androgen Biosynthesis and Metabolism Pathways Implicates Several Single Nucleotide Polymorphisms and Their Combinations as Prostate Cancer Risk Factors Cancer Res., January 15, 2006; 66(2): 743 - 747. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Wessels, T. Srikantha, S. Yi, S. Kuhl, L. Aravind, and D. R. Soll The Shwachman-Bodian-Diamond syndrome gene encodes an RNA-binding protein that localizes to the pseudopod of Dictyostelium amoebae during chemotaxis J. Cell Sci., January 15, 2006; 119(2): 370 - 379. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-H. Park, L. Aravind, E. C. Wolff, J. Kaevel, Y. S. Kim, and M. H. Park Molecular cloning, expression, and structural prediction of deoxyhypusine hydroxylase: A HEAT-repeat-containing metalloenzyme PNAS, January 3, 2006; 103(1): 51 - 56. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Anand, S. K. Verma, and B. Prakash Structural stabilization of GTP-binding domains in circularly permuted GTPases: implications for RNA binding. Nucleic Acids Res., January 1, 2006; 34(8): 2196 - 2205. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Doucleff, L. T. Malak, J. G. Pelton, and D. E. Wemmer The C-terminal RpoN Domain of {sigma}54 Forms an Unpredicted Helix-Turn-Helix Motif Similar to Domains of {sigma}70 J. Biol. Chem., December 16, 2005; 280(50): 41530 - 41536. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S.-J. Lee, D.-W. Lee, E.-A. Choe, Y.-H. Hong, S.-B. Kim, B.-C. Kim, and Y.-R. Pyun Characterization of a Thermoacidophilic L-Arabinose Isomerase from Alicyclobacillus acidocaldarius: Role of Lys-269 in pH Optimum Appl. Envir. Microbiol., December 1, 2005; 71(12): 7888 - 7896. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. S. Goodson, M. Kojadinovic, J. V. Troll, T. E. Scheetz, T. L. Casavant, M. B. Soares, and M. J. McFall-Ngai Identifying Components of the NF-{kappa}B Pathway in the Beneficial Euprymna scolopes-Vibrio fischeri Light Organ Symbiosis Appl. Envir. Microbiol., November 1, 2005; 71(11): 6934 - 6946. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Yang, L. Zhang, P. J. A. Erbel, K. H. Gardner, K. Ding, J. A. Garcia, and R. K. Bruick Functions of the Per/ARNT/Sim Domains of the Hypoxia-inducible Factor J. Biol. Chem., October 28, 2005; 280(43): 36047 - 36054. [Abstract] [Full Text] [PDF]
|
|