Bioinformatics, Vol 14, 892-893, Copyright © 1998 by Oxford University Press
JA Cuff, ME Clamp, AS Siddiqui, M Finlay and GJ Barton
SUMMARY: An interactive protein secondary structure prediction Internet
server is presented. The server allows a single sequence or multiple
alignment to be submitted, and returns predictions from six secondary
structure prediction algorithms that exploit evolutionary information from
multiple sequences. A consensus prediction is also returned which improves
the average Q3 accuracy of prediction by 1% to 72.9%. The server simplifies
the use of current prediction algorithms and allows conservation patterns
important to structure and function to be identified. AVAILABILITY:
http://barton.ebi.ac.uk/servers/jpred.h tml CONTACT: geoff@ebi.ac.uk
ARTICLES
JPred: a consensus secondary structure prediction server
Laboratory of Molecular Biophysics, Rex Richards Building, South Parks Road, Oxford OX1 3QU, UK.
![]()
CiteULike
Connotea
Del.icio.us What's this?
This article has been cited by other articles:
![]() |
K. Mukherjee, L. Brocchieri, and T. R. Burglin A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes Mol. Biol. Evol., December 1, 2009; 26(12): 2775 - 2794. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Saha, K. H. Biswas, C. Kondapalli, N. Isloor, and S. S. Visweswariah The Linker Region in Receptor Guanylyl Cyclases Is a Key Regulatory Module: MUTATIONAL ANALYSIS OF GUANYLYL CYCLASE C J. Biol. Chem., October 2, 2009; 284(40): 27135 - 27145. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Candela, E. Biagi, M. Centanni, S. Turroni, M. Vici, F. Musiani, B. Vitali, S. Bergmann, S. Hammerschmidt, and P. Brigidi Bifidobacterial enolase, a cell surface receptor for human plasminogen involved in the interaction with the host Microbiology, October 1, 2009; 155(10): 3294 - 3303. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. C. Freundt, L. Yu, E. Park, M. J. Lenardo, and X.-N. Xu Molecular Determinants for Subcellular Localization of the Severe Acute Respiratory Syndrome Coronavirus Open Reading Frame 3b Protein J. Virol., July 1, 2009; 83(13): 6631 - 6640. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. D. Kouri, N. E. Labrou, S. D. Garbis, K. I. Kalliampakou, C. Stedel, M. Dimou, M. K. Udvardi, P. Katinakis, and E. Flemetakis Molecular and Biochemical Characterization of the Parvulin-Type PPIases in Lotus japonicus Plant Physiology, July 1, 2009; 150(3): 1160 - 1173. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. Zubini, B. Zambelli, F. Musiani, S. Ciurli, P. Bertolini, and E. Baraldi The RNA Hydrolysis and the Cytokinin Binding Activities of PR-10 Proteins Are Differently Performed by Two Isoforms of the Pru p 1 Peach Major Allergen and Are Possibly Functionally Related Plant Physiology, July 1, 2009; 150(3): 1235 - 1247. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. C. Viertlboeck, S. Schweinsberg, R. Schmitt, F. W. Herberg, and T. W. Gobel The Chicken Leukocyte Receptor Complex Encodes a Family of Different Affinity FcY Receptors J. Immunol., June 1, 2009; 182(11): 6985 - 6992. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Dutta, K. Bandyopadhyay, A. B. Datta, A. A. Sardesai, and P. Parrack Properties of HflX, an Enigmatic Protein from Escherichia coli J. Bacteriol., April 1, 2009; 191(7): 2307 - 2314. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. G. Pell, V. Kanelis, L. W. Donaldson, P. Lynne Howell, and A. R. Davidson The phage {lambda} major tail protein structure reveals a common evolution for long-tailed phages and the type VI bacterial secretion system PNAS, March 17, 2009; 106(11): 4160 - 4165. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. M. Parrott, S. A. Sitarski, R. J. Arnold, L. K. Picton, R. B. Hill, and S. Mukhopadhyay Role of Conserved Cysteines in the Alphavirus E3 Protein J. Virol., March 15, 2009; 83(6): 2584 - 2591. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Tagami, H. Motose, and Y. Watanabe A dominant mutation in DCL1 suppresses the hyl1 mutant phenotype by promoting the processing of miRNA RNA, March 1, 2009; 15(3): 450 - 458. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. M. Bakheet and A. J. Doig Properties and identification of human protein drug targets Bioinformatics, February 15, 2009; 25(4): 451 - 457. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. L. Schulz and M. Aebi Analysis of Glycosylation Site Occupancy Reveals a Role for Ost3p and Ost6p in Site-specific N-Glycosylation Efficiency Mol. Cell. Proteomics, February 1, 2009; 8(2): 357 - 364. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. C. Viertlboeck, R. Schmitt, M. A. Hanczaruk, R. P. M. A. Crooijmans, M. A. M. Groenen, and T. W. Gobel A Novel Activating Chicken IgY FcR Is Related to Leukocyte Receptor Complex (LRC) Genes but Is Located on a Chromosomal Region Distinct from the LRC and FcR Gene Clusters J. Immunol., February 1, 2009; 182(3): 1533 - 1540. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-R. Su, K. Takeda, S. Tamura, Y. Fujiki, and K. Miki Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p PNAS, January 13, 2009; 106(2): 417 - 421. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. F. Waller, C. Jabbour, N. C. Chan, N. Celik, V. A. Likic, T. D. Mulhern, and T. Lithgow Evidence of a Reduced and Modified Mitochondrial Protein Import Apparatus in Microsporidian Mitosomes Eukaryot. Cell, January 1, 2009; 8(1): 19 - 26. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. P. Swiercz, Hindra, J. Bobek, H. J. Haiser, C. Di Berardo, B. Tjaden, and M. A. Elliot Small non-coding RNAs in Streptomyces coelicolor Nucleic Acids Res., December 1, 2008; 36(22): 7240 - 7251. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. D. Muhlebach, V. H. J. Leonard, and R. Cattaneo The Measles Virus Fusion Protein Transmembrane Region Modulates Availability of an Active Glycoprotein Complex and Fusion Efficiency J. Virol., November 15, 2008; 82(22): 11437 - 11445. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Baljuls, W. Schmitz, T. Mueller, R. P. Zahedi, A. Sickmann, M. Hekman, and U. R. Rapp Positive Regulation of A-RAF by Phosphorylation of Isoform-specific Hinge Segment and Identification of Novel Phosphorylation Sites J. Biol. Chem., October 3, 2008; 283(40): 27239 - 27254. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Banos, J. M. Lazaro, L. Villar, M. Salas, and M. de Vega Editing of misaligned 3'-termini by an intrinsic 3'-5' exonuclease activity residing in the PHP domain of a family X DNA polymerase Nucleic Acids Res., October 1, 2008; 36(18): 5736 - 5749. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Sundstrom, R. L. White, A. de Parseval, K. J. Sastry, G. Morris, C. K. Grant, and J. H. Elder Mapping of the CXCR4 Binding Site within Variable Region 3 of the Feline Immunodeficiency Virus Surface Glycoprotein J. Virol., September 15, 2008; 82(18): 9134 - 9142. [Abstract] [Full Text] [PDF] |
||||
![]() |
H. Sakiyama, R. M. Wynn, W.-R. Lee, M. Fukasawa, H. Mizuguchi, K. H. Gardner, J. J. Repa, and K. Uyeda Regulation of Nuclear Import/Export of Carbohydrate Response Element-binding Protein (ChREBP): INTERACTION OF AN {alpha}-HELIX OF ChREBP WITH THE 14-3-3 PROTEINS AND REGULATION BY PHOSPHORYLATION J. Biol. Chem., September 5, 2008; 283(36): 24899 - 24908. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Savic, T. Ilic-Tomic, R. Macmaster, B. Vasiljevic, and G. L. Conn Critical Residues for Cofactor Binding and Catalytic Activity in the Aminoglycoside Resistance Methyltransferase Sgm J. Bacteriol., September 1, 2008; 190(17): 5855 - 5861. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. G. Grummitt, F. M. Townsley, C. M. Johnson, A. J. Warren, and M. Bycroft Structural Consequences of Nucleophosmin Mutations in Acute Myeloid Leukemia J. Biol. Chem., August 22, 2008; 283(34): 23326 - 23332. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Zhu, J. O. Wrabl, A. P. Hayashi, L. S. Rose, and P. J. Thomas The Torsin-family AAA+ Protein OOC-5 Contains a Critical Disulfide Adjacent to Sensor-II That Couples Redox State to Nucleotide Binding Mol. Biol. Cell, August 1, 2008; 19(8): 3599 - 3612. [Abstract] [Full Text] [PDF] |
||||
![]() |
E. Sisakova, L. K. Stanley, M. Weiserova, and M. D. Szczelkun A RecB-family nuclease motif in the Type I restriction endonuclease EcoR124I Nucleic Acids Res., July 1, 2008; 36(12): 3939 - 3949. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Quan, Z.-L. Ji, X. Wang, A. M. Tartakoff, and T. Tao Evolutionary and Transcriptional Analysis of Karyopherin {beta} Superfamily Proteins Mol. Cell. Proteomics, July 1, 2008; 7(7): 1254 - 1269. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Cole, J. D. Barber, and G. J. Barton The Jpred 3 secondary structure prediction server Nucleic Acids Res., July 1, 2008; 36(suppl_2): W197 - W201. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. Siroy, C. Mailaender, D. Harder, S. Koerber, F. Wolschendorf, O. Danilchanka, Y. Wang, C. Heinz, and M. Niederweis Rv1698 of Mycobacterium tuberculosis Represents a New Class of Channel-forming Outer Membrane Proteins J. Biol. Chem., June 27, 2008; 283(26): 17827 - 17837. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. M. Cartwright, E.-K. Lim, C. Kleanthous, and D. J. Bowles A Kinetic Analysis of Regiospecific Glucosylation by Two Glycosyltransferases of Arabidopsis thaliana: DOMAIN SWAPPING TO INTRODUCE NEW ACTIVITIES J. Biol. Chem., June 6, 2008; 283(23): 15724 - 15731. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Gao, Y. Hou, H. Ebina, H. L. Levin, and D. F. Voytas Chromodomains direct integration of retrotransposons to heterochromatin Genome Res., March 1, 2008; 18(3): 359 - 369. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Gebhard and G. M. Cook Differential Regulation of High-Affinity Phosphate Transport Systems of Mycobacterium smegmatis: Identification of PhnF, a Repressor of the phnDCE Operon J. Bacteriol., February 15, 2008; 190(4): 1335 - 1343. [Abstract] [Full Text] [PDF] |
||||
![]() |
S.D. Dunn, L.M. Wahl, and G.B. Gloor Mutual information without the influence of phylogeny or entropy dramatically improves residue contact prediction Bioinformatics, February 1, 2008; 24(3): 333 - 340. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Piontek, L. Winkler, H. Wolburg, S. L. Muller, N. Zuleger, C. Piehl, B. Wiesner, G. Krause, and I. E. Blasig Formation of tight junction: determinants of homophilic interaction between classic claudins FASEB J, January 1, 2008; 22(1): 146 - 158. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. W. Abbott, J. M. Eirin-Lopez, and A. B. Boraston Insight into Ligand Diversity and Novel Biological Roles for Family 32 Carbohydrate-Binding Modules Mol. Biol. Evol., January 1, 2008; 25(1): 155 - 167. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. J. Mankelow, N. Burton, F. O. Stefansdottir, F. A. Spring, S. F. Parsons, J. S. Pedersen, C. L. P. Oliveira, D. Lammie, T. Wess, N. Mohandas, et al. The Laminin 511/521 binding site on the Lutheran blood group glycoprotein is located at the flexible junction of Ig domains 2 and 3 Blood, November 1, 2007; 110(9): 3398 - 3406. [Abstract] [Full Text] [PDF] |
||||
![]() |
K.-F. Wong, J. M. Luk, R. H. Cheng, L. B. Klickstein, and S.-T. Fan Characterization of two novel LPS-binding sites in leukocyte integrin {beta}A domain FASEB J, October 1, 2007; 21(12): 3231 - 3239. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Balaji and L. Aravind The RAGNYA fold: a novel fold with multiple topological variants found in functionally diverse nucleic acid, nucleotide and peptide-binding proteins Nucleic Acids Res., September 27, 2007; 35(17): 5658 - 5671. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Y. Logunov, O. V. Zubkova, A. S. Karyagina-Zhulina, E. A. Shuvalova, A. P. Karpov, M. M. Shmarov, I. L. Tutykhina, Y. S. Alyapkina, N. M. Grezina, N. A. Zinovieva, et al. Identification of HI-Like Loop in CELO Adenovirus Fiber for Incorporation of Receptor Binding Motifs J. Virol., September 15, 2007; 81(18): 9641 - 9652. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. D. Lindenbach, B. M. Pragai, R. Montserret, R. K. F. Beran, A. M. Pyle, F. Penin, and C. M. Rice The C Terminus of Hepatitis C Virus NS4A Encodes an Electrostatic Switch That Regulates NS5A Hyperphosphorylation and Viral Replication J. Virol., September 1, 2007; 81(17): 8905 - 8918. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-K. Ko, K.-H. Choi, Z. Pan, P. Lin, N. Weisleder, C.-W. Kim, and J. Ma The tail-anchoring domain of Bfl1 and HCCS1 targets mitochondrial membrane permeability to induce apoptosis J. Cell Sci., August 15, 2007; 120(16): 2912 - 2923. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Hirose, K. Shimizu, S. Kanai, Y. Kuroda, and T. Noguchi POODLE-L: a two-level SVM prediction system for reliably predicting long disordered regions Bioinformatics, August 15, 2007; 23(16): 2046 - 2053. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Casola, A. M. Lawing, E. Betran, and C. Feschotte PIF-like Transposons are Common in Drosophila and Have Been Repeatedly Domesticated to Generate New Host Genes Mol. Biol. Evol., August 1, 2007; 24(8): 1872 - 1888. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. C. Geething and J. A. Spudich Identification of a Minimal Myosin Va Binding Site within an Intrinsically Unstructured Domain of Melanophilin J. Biol. Chem., July 20, 2007; 282(29): 21518 - 21528. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Zhou, W.-P. Tzeng, W. Yang, Y. Zhou, Y. Ye, H.-w. Lee, T. K. Frey, and J. Yang Identification of a Ca2+-Binding Domain in the Rubella Virus Nonstructural Protease J. Virol., July 15, 2007; 81(14): 7517 - 7528. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Moretti, F. Armougom, I. M. Wallace, D. G. Higgins, C. V. Jongeneel, and C. Notredame The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods Nucleic Acids Res., July 13, 2007; 35(suppl_2): W645 - W648. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Klaiman, M. Amitsur, S. Blanga-Kanfi, M. Chai, D. R. Davis, and G. Kaufmann Parallel dimerization of a PrrC-anticodon nuclease region implicated in tRNALys recognition Nucleic Acids Res., July 9, 2007; 35(14): 4704 - 4714. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Ueguchi-Tanaka, M. Nakajima, E. Katoh, H. Ohmiya, K. Asano, S. Saji, X. Hongyu, M. Ashikari, H. Kitano, I. Yamaguchi, et al. Molecular Interactions of a Soluble Gibberellin Receptor, GID1, with a Rice DELLA Protein, SLR1, and Gibberellin PLANT CELL, July 1, 2007; 19(7): 2140 - 2155. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Mrosek, D. Labeit, S. Witt, H. Heerklotz, E. von Castelmur, S. Labeit, and O. Mayans Molecular determinants for the recruitment of the ubiquitin-ligase MuRF-1 onto M-line titin FASEB J, May 1, 2007; 21(7): 1383 - 1392. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. S. Almeida, M. A. Johnson, T. Herrmann, M. Geralt, and K. Wuthrich Novel {beta}-Barrel Fold in the Nuclear Magnetic Resonance Structure of the Replicase Nonstructural Protein 1 from the Severe Acute Respiratory Syndrome Coronavirus J. Virol., April 1, 2007; 81(7): 3151 - 3161. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Hwang, Z. Gou, and I. B. Kuznetsov DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins Bioinformatics, March 1, 2007; 23(5): 634 - 636. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Seidel, L. J. Alderwick, H. Sahm, G. S. Besra, and L. Eggeling Topology and mutational analysis of the single Emb arabinofuranosyltransferase of Corynebacterium glutamicum as a model of Emb proteins of Mycobacterium tuberculosis Glycobiology, February 1, 2007; 17(2): 210 - 219. [Abstract] [Full Text] [PDF] |
||||
![]() |
X. Luo, U. Schwarz-Linek, C. H. Botting, R. Hensel, B. Siebers, and M. F. White CC1, a Novel Crenarchaeal DNA Binding Protein J. Bacteriol., January 15, 2007; 189(2): 403 - 409. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Jayaram, K. Bhushan, S. R. Shenoy, P. Narang, S. Bose, P. Agrawal, D. Sahu, and V. Pandey Bhageerath: an energy based web enabled computer software suite for limiting the search space of tertiary structures of small globular proteins Nucleic Acids Res., December 4, 2006; 34(21): 6195 - 6204. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. M. Babu, L. M. Iyer, S. Balaji, and L. Aravind The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons Nucleic Acids Res., December 2, 2006; 34(22): 6505 - 6520. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. A. Frye, R. Assalkhou, R. F. Collins, R. C. Ford, C. Petersson, J. P. Derrick, and T. Tonjum Topology of the outer-membrane secretin PilQ from Neisseria meningitidis Microbiology, December 1, 2006; 152(12): 3751 - 3764. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Stitham, S. R. Gleim, K. Douville, E. Arehart, and J. Hwa Versatility and Differential Roles of Cysteine Residues in Human Prostacyclin Receptor Structure and Function J. Biol. Chem., December 1, 2006; 281(48): 37227 - 37236. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. D. Silva, L. Shen, V. Tcherepanov, C. Watson, and C. Upton Predicted function of the vaccinia virus G5R protein Bioinformatics, December 1, 2006; 22(23): 2846 - 2850. [Abstract] [Full Text] [PDF] |
||||
![]() |
Z. Birtle and C. P. Ponting Meisetz and the birth of the KRAB motif Bioinformatics, December 1, 2006; 22(23): 2841 - 2845. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Mackenzie, L. Pedersen, S. Arent, and A. Henriksen Controlling Electron Transfer in Acyl-CoA Oxidases and Dehydrogenases: A STRUCTURAL VIEW J. Biol. Chem., October 13, 2006; 281(41): 31012 - 31020. [Abstract] [Full Text] [PDF] |
||||
![]() |
O. B. Kashlan, A. B. Maarouf, C. Kussius, R. M. Denshaw, K. M. Blumenthal, and T. R. Kleyman Distinct Structural Elements in the First Membrane-spanning Segment of the Epithelial Sodium Channel J. Biol. Chem., October 13, 2006; 281(41): 30455 - 30462. [Abstract] [Full Text] [PDF] |
||||
![]() |
T. A. Hill, J. Broadhvest, R. K. Kuzoff, and C. S. Gasser Arabidopsis SHORT INTEGUMENTS 2 Is a Mitochondrial DAR GTPase Genetics, October 1, 2006; 174(2): 707 - 718. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Zhou, C. Y. Liu, S. H. Back, R. L. Clark, D. Peisach, Z. Xu, and R. J. Kaufman The crystal structure of human IRE1 luminal domain reveals a conserved dimerization interface required for activation of the unfolded protein response PNAS, September 26, 2006; 103(39): 14343 - 14348. [Abstract] [Full Text] [PDF] |
||||
![]() |
P. R. Macdonald, P. Progias, B. Ciani, S. Patel, U. Mayer, M. O. Steinmetz, and R. A. Kammerer Structure of the Extracellular Domain of Tie Receptor Tyrosine Kinases and Localization of the Angiopoietin-binding Epitope J. Biol. Chem., September 22, 2006; 281(38): 28408 - 28414. [Abstract] [Full Text] [PDF] |
||||
![]() |
Q.-y. He, X.-h. Liu, Q. Li, D. J. Studholme, X.-w. Li, and S.-p. Liang G8: a novel domain associated with polycystic kidney disease and non-syndromic hearing loss Bioinformatics, September 15, 2006; 22(18): 2189 - 2191. [Abstract] [Full Text] [PDF] |
||||
![]() |
M.-P. Egloff, H. Malet, A. Putics, M. Heinonen, H. Dutartre, A. Frangeul, A. Gruez, V. Campanacci, C. Cambillau, J. Ziebuhr, et al. Structural and Functional Basis for ADP-Ribose and Poly(ADP-Ribose) Binding by Viral Macro Domains. J. Virol., September 1, 2006; 80(17): 8493 - 8502. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Stigloher, J. Ninkovic, M. Laplante, A. Geling, B. Tannhauser, S. Topp, H. Kikuta, T. S. Becker, C. Houart, and L. Bally-Cuif Segregation of telencephalic and eye-field identities inside the zebrafish forebrain territory is controlled by Rx3 Development, August 1, 2006; 133(15): 2925 - 2935. [Abstract] [Full Text] [PDF] |
||||
![]() |
A. E. Ciocchini, M. S. Roset, G. Briones, N. I. de Iannino, and R. A. Ugalde Identification of active site residues of the inverting glycosyltransferase Cgs required for the synthesis of cyclic {beta}-1,2-glucan, a Brucella abortus virulence factor Glycobiology, July 1, 2006; 16(7): 679 - 691. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Behr, C. Hoffmann, G. Ottolina, and K.-N. Klotz Novel Mutants of the Human beta1-Adrenergic Receptor Reveal Amino Acids Relevant for Receptor Activation J. Biol. Chem., June 30, 2006; 281(26): 18120 - 18125. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. S. Makarova, E. V. Koonin, R. Haselkorn, and M. Y. Galperin Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion Bioinformatics, June 1, 2006; 22(11): 1297 - 1301. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. M. Sutherland, P. A. B. Moretti, N. M. Hewitt, C. J. Bagley, M. A. Vadas, and S. M. Pitson The Calmodulin-binding Site of Sphingosine Kinase and Its Role in Agonist-dependent Translocation of Sphingosine Kinase 1 to the Plasma Membrane J. Biol. Chem., April 28, 2006; 281(17): 11693 - 11701. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-H. Lee, S. C. Murphy, M. Belshan, W. O. Sparks, Y. Wannemuehler, S. Liu, T. J. Hope, D. Dobbs, and S. Carpenter Characterization of Functional Domains of Equine Infectious Anemia Virus Rev Suggests a Bipartite RNA-Binding Domain. J. Virol., April 1, 2006; 80(8): 3844 - 3852. [Abstract] [Full Text] [PDF] |
||||
![]() |
V Tiranti, E Briem, E Lamantea, R Mineri, E Papaleo, L D. Gioia, F Forlani, P Rinaldo, P Dickson, B Abu-Libdeh, et al. ETHE1 mutations are specific to ethylmalonic encephalopathy J. Med. Genet., April 1, 2006; 43(4): 340 - 346. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Gonzalez-Lamothe, D. I. Tsitsigiannis, A. A. Ludwig, M. Panicot, K. Shirasu, and J. D.G. Jones The U-Box Protein CMPG1 Is Required for Efficient Activation of Defense Mechanisms Triggered by Multiple Resistance Genes in Tobacco and Tomato PLANT CELL, April 1, 2006; 18(4): 1067 - 1083. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. Mukherjee and T. R. Burglin MEKHLA, a Novel Domain with Similarity to PAS Domains, Is Fused to Plant Homeodomain-Leucine Zipper III Proteins. Plant Physiology, April 1, 2006; 140(4): 1142 - 1150. [Abstract] [Full Text] [PDF] |
||||
![]() |
I. M. Wallace, O. O'Sullivan, D. G. Higgins, and C. Notredame M-Coffee: combining multiple sequence alignment methods with T-Coffee Nucleic Acids Res., March 23, 2006; 34(6): 1692 - 1699. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. Ge, H. Hu, K. Ding, L. Sun, and S. Zheng Protein Interaction Analysis of ST14 Domains and Their Point and Deletion Mutants J. Biol. Chem., March 17, 2006; 281(11): 7406 - 7412. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. N. Amin, B. L. Taylor, and M. S. Johnson Topology and Boundaries of the Aerotaxis Receptor Aer in the Membrane of Escherichia coli J. Bacteriol., February 1, 2006; 188(3): 894 - 901. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. M. Chung, G. E. Nybakken, B. S. Thompson, M. J. Engle, A. Marri, D. H. Fremont, and M. S. Diamond Antibodies against West Nile Virus Nonstructural Protein NS1 Prevent Lethal Infection through Fc {gamma} Receptor-Dependent and -Independent Mechanisms J. Virol., February 1, 2006; 80(3): 1340 - 1351. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. M. Iyer, A. M. Burroughs, and L. Aravind The ASCH superfamily: novel domains with a fold related to the PUA domain and a potential role in RNA metabolism Bioinformatics, February 1, 2006; 22(3): 257 - 263. [Abstract] [Full Text] [PDF] |
||||
![]() |
Y. Matsumoto, M. Murai, D. Fujita, K. Sakamoto, H. Miyoshi, M. Yoshida, and T. Mogi Mass Spectrometric Analysis of the Ubiquinol-binding Site in Cytochrome bd from Escherichia coli J. Biol. Chem., January 27, 2006; 281(4): 1905 - 1912. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Casali, A. M. White, and L. W. Riley Regulation of the Mycobacterium tuberculosis mce1 Operon J. Bacteriol., January 15, 2006; 188(2): 441 - 449. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Herzberg, I. K. Kaye, W. Peti, and T. K. Wood YdgG (TqsA) Controls Biofilm Formation in Escherichia coli K-12 through Autoinducer 2 Transport J. Bacteriol., January 15, 2006; 188(2): 587 - 598. [Abstract] [Full Text] [PDF] |
||||
![]() |
N. Mononen, E. H. Seppala, P. Duggal, V. Autio, T. Ikonen, P. Ellonen, J. Saharinen, J. Saarela, M. Vihinen, T. L.J. Tammela, et al. Profiling Genetic Variation along the Androgen Biosynthesis and Metabolism Pathways Implicates Several Single Nucleotide Polymorphisms and Their Combinations as Prostate Cancer Risk Factors Cancer Res., January 15, 2006; 66(2): 743 - 747. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. Wessels, T. Srikantha, S. Yi, S. Kuhl, L. Aravind, and D. R. Soll The Shwachman-Bodian-Diamond syndrome gene encodes an RNA-binding protein that localizes to the pseudopod of Dictyostelium amoebae during chemotaxis J. Cell Sci., January 15, 2006; 119(2): 370 - 379. [Abstract] [Full Text] [PDF] |
||||
![]() |
J.-H. Park, L. Aravind, E. C. Wolff, J. Kaevel, Y. S. Kim, and M. H. Park Molecular cloning, expression, and structural prediction of deoxyhypusine hydroxylase: A HEAT-repeat-containing metalloenzyme PNAS, January 3, 2006; 103(1): 51 - 56. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Anand, S. K. Verma, and B. Prakash Structural stabilization of GTP-binding domains in circularly permuted GTPases: implications for RNA binding. Nucleic Acids Res., January 1, 2006; 34(8): 2196 - 2205. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Doucleff, L. T. Malak, J. G. Pelton, and D. E. Wemmer The C-terminal RpoN Domain of {sigma}54 Forms an Unpredicted Helix-Turn-Helix Motif Similar to Domains of {sigma}70 J. Biol. Chem., December 16, 2005; 280(50): 41530 - 41536. [Abstract] [Full Text] [PDF] |
||||
![]() |
S.-J. Lee, D.-W. Lee, E.-A. Choe, Y.-H. Hong, S.-B. Kim, B.-C. Kim, and Y.-R. Pyun Characterization of a Thermoacidophilic L-Arabinose Isomerase from Alicyclobacillus acidocaldarius: Role of Lys-269 in pH Optimum Appl. Envir. Microbiol., December 1, 2005; 71(12): 7888 - 7896. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. S. Goodson, M. Kojadinovic, J. V. Troll, T. E. Scheetz, T. L. Casavant, M. B. Soares, and M. J. McFall-Ngai Identifying Components of the NF-{kappa}B Pathway in the Beneficial Euprymna scolopes-Vibrio fischeri Light Organ Symbiosis Appl. Envir. Microbiol., November 1, 2005; 71(11): 6934 - 6946. [Abstract] [Full Text] [PDF] |
||||
![]() |
J. Yang, L. Zhang, P. J. A. Erbel, K. H. Gardner, K. Ding, J. A. Garcia, and R. K. Bruick Functions of the Per/ARNT/Sim Domains of the Hypoxia-inducible Factor J. Biol. Chem., October 28, 2005; 280(43): 36047 - 36054. [Abstract] [Full Text] [PDF] |
||||
























