Bioinformatics, Vol 14, 378-379, Copyright © 1998 by Oxford University Press
T Hirokawa, S Boon-Chieng and S Mitaku
SUMMARY: The system SOSUI for the discrimination of membrane proteins and
soluble ones together with the prediction of transmembrane helices was
developed, in which the accuracy of the classification of proteins was 99%
and the corresponding value for the transmembrane helix prediction was 97%.
AVAILABILITY: The system SOSUI is available through internet access:
http://www.tuat.ac.jp/~mitaku/sosui/. CONTACT: sosui@biophys.bio.tuat.
ac.jp.
ARTICLES
SOSUI: classification and secondary structure prediction system for membrane proteins
Department of Biotechnology, Tokyo University of Agriculture and Technology, Nakacho, Koganei, Tokyo 184, Japan.
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K. Kaluzny, P. D. Abeyrathne, and J. S. Lam Coexistence of Two Distinct Versions of O-Antigen Polymerase, Wzy-Alpha and Wzy-Beta, in Pseudomonas aeruginosa Serogroup O2 and Their Contributions to Cell Surface Diversity J. Bacteriol., June 1, 2007; 189(11): 4141 - 4152. [Abstract] [Full Text] [PDF]
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R. van Lis, G. Mendoza-Hernandez, G. Groth, and A. Atteia New Insights into the Unique Structure of the F0F1-ATP Synthase from the Chlamydomonad Algae Polytomella sp. and Chlamydomonas reinhardtii Plant Physiology, June 1, 2007; 144(2): 1190 - 1199. [Abstract] [Full Text] [PDF]
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K. Kondo, Y. Ochiai, M. Katayama, and M. Ikeuchi The Membrane-Associated CpcG2-Phycobilisome in Synechocystis: A New Photosystem I Antenna Plant Physiology, June 1, 2007; 144(2): 1200 - 1210. [Abstract] [Full Text] [PDF]
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K. Parschat, J. Overhage, A. W. Strittmatter, A. Henne, G. Gottschalk, and S. Fetzner Complete Nucleotide Sequence of the 113-Kilobase Linear Catabolic Plasmid pAL1 of Arthrobacter nitroguajacolicus Ru61a and Transcriptional Analysis of Genes Involved in Quinaldine Degradation J. Bacteriol., May 15, 2007; 189(10): 3855 - 3867. [Abstract] [Full Text] [PDF]
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 K. Hamuro, H. Suetake, N. R. Saha, K. Kikuchi, and Y. Suzuki A Teleost Polymeric Ig Receptor Exhibiting Two Ig-Like Domains Transports Tetrameric IgM into the Skin J. Immunol., May 1, 2007; 178(9): 5682 - 5689. [Abstract] [Full Text] [PDF]
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Y.-J. Lu, F. Zhang, K. D. Grimes, R. E. Lee, and C. O. Rock Topology and Active Site of PlsY: THE BACTERIAL ACYLPHOSPHATE:GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE J. Biol. Chem., April 13, 2007; 282(15): 11339 - 11346. [Abstract] [Full Text] [PDF]
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K. Jung, T. Odenbach, and M. Timmen The Quorum-Sensing Hybrid Histidine Kinase LuxN of Vibrio harveyi Contains a Periplasmically Located N Terminus J. Bacteriol., April 1, 2007; 189(7): 2945 - 2948. [Abstract] [Full Text] [PDF]
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H. Kitagawa, T. Izumikawa, S. Mizuguchi, K. Dejima, K. H. Nomura, N. Egusa, F. Taniguchi, J.-i. Tamura, K. Gengyo-Ando, S. Mitani, et al. Expression of rib-1, a Caenorhabditis elegans Homolog of the Human Tumor Suppressor EXT Genes, Is Indispensable for Heparan Sulfate Synthesis and Embryonic Morphogenesis J. Biol. Chem., March 16, 2007; 282(11): 8533 - 8544. [Abstract] [Full Text] [PDF]
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M. M. Gromiha, Y. Yabuki, S. Kundu, S. Suharnan, and M. Suwa TMBETA-GENOME: database for annotated {beta}-barrel membrane proteins in genomic sequences Nucleic Acids Res., January 12, 2007; 35(suppl_1): D314 - D316. [Abstract] [Full Text] [PDF]
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J.-i. Takeda, Y. Suzuki, M. Nakao, T. Kuroda, S. Sugano, T. Gojobori, and T. Imanishi H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational Nucleic Acids Res., January 12, 2007; 35(suppl_1): D104 - D109. [Abstract] [Full Text] [PDF]
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T. Fujiki, K. Nanatani, K. Nishitani, K. Yagi, F. Ohnishi, H. Yoneyama, T. Uchida, T. Nakajima, and K. Abea Membrane Topology of Aspartate:Alanine Antiporter AspT from Comamonas testosteroni J. Biochem., January 1, 2007; 141(1): 85 - 91. [Abstract] [Full Text] [PDF]
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E. B. Duffy and B. Barquera Membrane Topology Mapping of the Na+-Pumping NADH: Quinone Oxidoreductase from Vibrio cholerae by PhoA- Green Fluorescent Protein Fusion Analysis J. Bacteriol., December 15, 2006; 188(24): 8343 - 8351. [Abstract] [Full Text] [PDF]
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K. L. Wilson, K. R. Fitch, B. T. Bafus, and B. T. Wakimoto Sperm plasma membrane breakdown during Drosophila fertilization requires Sneaky, an acrosomal membrane protein Development, December 15, 2006; 133(24): 4871 - 4879. [Abstract] [Full Text] [PDF]
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A. Wong, S. N. Albright, and M. F. Wolfner Evidence for structural constraint on ovulin, a rapidly evolving Drosophila melanogaster seminal protein PNAS, December 5, 2006; 103(49): 18644 - 18649. [Abstract] [Full Text] [PDF]
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 Z. Ouyang and R. Isaacson Identification and Characterization of a Novel ABC Iron Transport System, fit, in Escherichia coli Infect. Immun., December 1, 2006; 74(12): 6949 - 6956. [Abstract] [Full Text] [PDF]
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G. Zhang and H. Sanfacon Characterization of Membrane Association Domains within the Tomato Ringspot Nepovirus X2 Protein, an Endoplasmic Reticulum-Targeted Polytopic Membrane Protein J. Virol., November 1, 2006; 80(21): 10847 - 10857. [Abstract] [Full Text] [PDF]
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S. R. Davis-Kaplan, M. A. Compton, A. R. Flannery, D. M. Ward, J. Kaplan, T. H. Stevens, and L. A. Graham PKR1 Encodes an Assembly Factor for the Yeast V-Type ATPase J. Biol. Chem., October 20, 2006; 281(42): 32025 - 32035. [Abstract] [Full Text] [PDF]
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