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Bioinformatics Vol. 15 no. 12 1999
Pages 1058-1059
© 1999 Oxford University Press

Shufflet: shuffling sequences while conserving the k-let counts

Eivind Coward 1

1 Laboratoire Génome et Informatique, Universitéde Versailles Saint-Quentin-en-Yvelines, 45 avenue des Etats-Unis, 78035 Versailles cedex, France

Summary: Shufflet is a program and a web-application that generates fast random shufflings of sequences (DNA, protein or others), conserving the exact k-let counts for a given k. The sequences are sampled uniformly from all the valid permutations.

Availability: As a web application: http://www.genetique.uvsq.fr/eivind/shufflet.html. Source code is available on request for academic use.

Contact: coward{at}genetique.uvsq.fr

Received on May 5, 1999 ; revised on June 17, 1999 ; accepted on June 28, 1999

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