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Bioinformatics, Vol 15, 172-173, Copyright © 1999 by Oxford University Press


ARTICLES

TargetFinder: searching annotated sequence databases for target genes of transcription factors

G Lavorgna, A Guffanti, G Borsani, A Ballabio and E Boncinelli
DIBIT, HSR Via Olgettina 60, 20132 Milano, Centro per lo studio della Farmacologia Cellulare e Molecolare, CNR, Via Vanvitelli 32, 20129 Milano, Italy.

SUMMARY: TargetFinder is a new software tool to search a database of annotated sequences for transcription factor binding sites located in context with other important transcription regulatory signals and regions, like the TATA element, the promoter, and so on, thereby greatly reducing the background usually associated with this kind of search. AVAILABILITY: The TargetFinder Web service is available at http://hercules.tigem.it/TargetFinder.html CONTACT: giovanni.lavorgna@hsr.it
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