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Bioinformatics, Vol 15, 176-177, Copyright © 1999 by Oxford University Press

ARTICLES

PredAcc: prediction of solvent accessibility

MH Mucchielli-Giorgi, S Hazout and P Tuffery
Equipe de Bioinformatique Moleculaire, INSERM U155, Universite Paris 7, case 7113, 2, place Jussieu, 75251 Paris cedex 05, France.

SUMMARY: PredAcc is a tool for predicting the solvent accessibility of protein residues from the sequence at different relative accessibility levels (0-55%). The prediction rate varies between 70. 7% (for 25% relative accessibility) and 85.7% (for 0% relative accessibility). Amino acids are predicted in four categories: almost certainly hidden and almost certainly exposed with a given a posteriori prediction error, probably hidden and probably exposed otherwise. AVAILABILITY: http://condor.urbb.jussieu.fr/PredAccCfg.html CONTACT: tuffery@urbb.jussieu.fr
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