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Bioinformatics, Vol 15, 258-259, Copyright © 1999 by Oxford University Press

ARTICLES

Removing redundancy in SWISS-PROT and TrEMBL

C O'Donovan, MJ Martin, E Glemet, JJ Codani and R Apweiler
EMBL Outstation - The European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. odonovan@ebi.ac.uk

SUMMARY: One of the distinguishing criteria of the SWISS-PROT protein sequence data bank is minimal redundancy. The introduction of TrEMBL as a supplementary database ensured the comprehensiveness of SWISS-PROT and TrEMBL but introduced some degree of redundancy. We developed a strategy to identify the redundancy present within and between SWISS- PROT and TrEMBL and its subsequent removal. AVAILABILITY: The tools mentioned in this paper are available on request.
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