Bioinformatics, Vol 15, 607-611, Copyright © 1999 by Oxford University Press
J Zhu and MQ Zhang
MOTIVATION: In order to facilitate a systematic study of the promoters and
transcriptionally regulatory cis-elements of the yeast Saccharomyces
cerevisiae on a genomic scale, we have developed a comprehensive
yeast-specific promoter database, SCPD. RESULTS: Currently SCPD contains
580 experimentally mapped transcription factor (TF) binding sites and 425
transcriptional start sites (TSS) as its primary data entries. It also
contains relevant binding affinity and expression data where available. In
addition to mechanisms for promoter information (including sequence)
retrieval and a data submission form, SCPD also provides some simple but
useful tools for promoter sequence analysis. AVAILABILITY: SCPD can be
accessed from the URL http://cgsigma.cshl.org/jian. The database is
continually updated.
ARTICLES
SCPD: a promoter database of the yeast Saccharomyces cerevisiae
Cold Spring Harbor Laboratory, PO Box 100, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. zhuj@cshl.org
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