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Bioinformatics, Vol 15, 769-770, Copyright © 1999 by Oxford University Press

ARTICLES

MatrixPlot: visualizing sequence constraints

J Gorodkin, HH Staerfeldt, O Lund and S Brunak
Center for Biological Sequence Analysis, Department of Biotechnology, The Technical University of Denmark, Lyngby, Denmark.

SUMMARY: MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot. AVAILABILITY: MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot. CONTACT: gorodkin@cbs.dtu.dk
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