Bioinformatics Vol. 16 no. 10 2000
Pages 944-945
© 2000 Oxford University Press
Applications Note |
Artemis: sequence visualization and annotation
1 The Sanger Centre, Wellcome Trust Genome
Campus, Hinxton, Cambridge, CB10 1SA, UK
2 The MRC Laboratory of Molecular Biology,
Hills Road, Cambridge, CB2 2QH, UK
Received on March 22, 2000
; accepted on May 30, 2000
Summary: Artemis is a DNA sequence visualization and annotation tool that allows the results of any analysis or sets of analyses to be viewed in the context of the sequence and its six-frame translation. Artemis is especially useful in analysing the compact genomes of bacteria, archaea and lower eukaryotes, and will cope with sequences of any size from small genes to whole genomes. It is implemented in Java, and can be run on any suitable platform. Sequences and annotation can be read and written directly in EMBL, GenBank and GFF format.
Availability: Artemis is available under the GNU General Public License from http://www.sanger.ac.uk/Software/Artemis
Contact: kmr{at}sanger.ac.uk
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K. Parschat, J. Overhage, A. W. Strittmatter, A. Henne, G. Gottschalk, and S. Fetzner Complete Nucleotide Sequence of the 113-Kilobase Linear Catabolic Plasmid pAL1 of Arthrobacter nitroguajacolicus Ru61a and Transcriptional Analysis of Genes Involved in Quinaldine Degradation J. Bacteriol., May 15, 2007; 189(10): 3855 - 3867. [Abstract] [Full Text] [PDF]
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|
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A. J. O'Neill, A. R. Larsen, R. Skov, A. S. Henriksen, and I. Chopra Characterization of the Epidemic European Fusidic Acid-Resistant Impetigo Clone of Staphylococcus aureus J. Clin. Microbiol., May 1, 2007; 45(5): 1505 - 1510. [Abstract] [Full Text] [PDF]
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S. Robbens, E. Derelle, C. Ferraz, J. Wuyts, H. Moreau, and Y. Van de Peer The Complete Chloroplast and Mitochondrial DNA Sequence of Ostreococcus tauri: Organelle Genomes of the Smallest Eukaryote Are Examples of Compaction Mol. Biol. Evol., April 1, 2007; 24(4): 956 - 968. [Abstract] [Full Text] [PDF]
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|
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L. Feng, W. Wang, J. Cheng, Y. Ren, G. Zhao, C. Gao, Y. Tang, X. Liu, W. Han, X. Peng, et al. Genome and proteome of long-chain alkane degrading Geobacillus thermodenitrificans NG80-2 isolated from a deep-subsurface oil reservoir PNAS, March 27, 2007; 104(13): 5602 - 5607. [Abstract] [Full Text] [PDF]
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R. Brosch, S. V. Gordon, T. Garnier, K. Eiglmeier, W. Frigui, P. Valenti, S. Dos Santos, S. Duthoy, C. Lacroix, C. Garcia-Pelayo, et al. Genome plasticity of BCG and impact on vaccine efficacy PNAS, March 27, 2007; 104(13): 5596 - 5601. [Abstract] [Full Text] [PDF]
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A. R. Parks and J. E. Peters Transposon Tn7 Is Widespread in Diverse Bacteria and Forms Genomic Islands J. Bacteriol., March 1, 2007; 189(5): 2170 - 2173. [Abstract] [Full Text] [PDF]
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|
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C. Muller, S. Nolden, P. Gebhardt, E. Heinzelmann, C. Lange, O. Puk, K. Welzel, W. Wohlleben, and D. Schwartz Sequencing and Analysis of the Biosynthetic Gene Cluster of the Lipopeptide Antibiotic Friulimicin in Actinoplanes friuliensis Antimicrob. Agents Chemother., March 1, 2007; 51(3): 1028 - 1037. [Abstract] [Full Text] [PDF]
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K.-H. Ling, M.-A. Rajandream, P. Rivailler, A. Ivens, S.-J. Yap, A. M.B.N. Madeira, K. Mungall, K. Billington, W.-Y. Yee, A. T. Bankier, et al. Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization Genome Res., March 1, 2007; 17(3): 311 - 319. [Abstract] [Full Text] [PDF]
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M. T. G. Holden, A. Scott, I. Cherevach, T. Chillingworth, C. Churcher, A. Cronin, L. Dowd, T. Feltwell, N. Hamlin, S. Holroyd, et al. Complete Genome of Acute Rheumatic Fever-Associated Serotype M5 Streptococcus pyogenes Strain Manfredo J. Bacteriol., February 15, 2007; 189(4): 1473 - 1477. [Abstract] [Full Text] [PDF]
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E. E. Allen, G. W. Tyson, R. J. Whitaker, J. C. Detter, P. M. Richardson, and J. F. Banfield Genome dynamics in a natural archaeal population PNAS, February 6, 2007; 104(6): 1883 - 1888. [Abstract] [Full Text] [PDF]
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H. Sletvold, P. J. Johnsen, G. S. Simonsen, B. Aasnaes, A. Sundsfjord, and K. M. Nielsen Comparative DNA Analysis of Two vanA Plasmids from Enterococcus faecium Strains Isolated from Poultry and a Poultry Farmer in Norway Antimicrob. Agents Chemother., February 1, 2007; 51(2): 736 - 739. [Abstract] [Full Text] [PDF]
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B. Subsin, C. E. Chambers, M. B. Visser, and P. A. Sokol Identification of Genes Regulated by the cepIR Quorum-Sensing System in Burkholderia cenocepacia by High-Throughput Screening of a Random Promoter Library J. Bacteriol., February 1, 2007; 189(3): 968 - 979. [Abstract] [Full Text] [PDF]
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M. Juhas, D. W. Crook, I. D. Dimopoulou, G. Lunter, R. M. Harding, D. J. P. Ferguson, and D. W. Hood Novel Type IV Secretion System Involved in Propagation of Genomic Islands J. Bacteriol., February 1, 2007; 189(3): 761 - 771. [Abstract] [Full Text] [PDF]
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J. Hart, M. Ackermann, G. Jayawardane, G. Russell, D. M. Haig, H. Reid, and J. P. Stewart Complete sequence and analysis of the ovine herpesvirus 2 genome J. Gen. Virol., January 1, 2007; 88(1): 28 - 39. [Abstract] [Full Text] [PDF]
|
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L. Feng, A. V. Perepelov, G. Zhao, S. D. Shevelev, Q. Wang, S. N. Senchenkova, A. S. Shashkov, Y. Geng, P. R. Reeves, Y. A. Knirel, et al. Structural and genetic evidence that the Escherichia coli O148 O antigen is the precursor of the Shigella dysenteriae type 1 O antigen and identification of a glucosyltransferase gene Microbiology, January 1, 2007; 153(1): 139 - 147. [Abstract] [Full Text] [PDF]
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X. Didelot, M. Achtman, J. Parkhill, N. R. Thomson, and D. Falush A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination? Genome Res., January 1, 2007; 17(1): 61 - 68. [Abstract] [Full Text] [PDF]
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S. A. Jarmin, R. Manvell, R. E. Gough, S. M. Laidlaw, and M. A. Skinner Retention of 1.2 kbp of 'novel' genomic sequence in two European field isolates and some vaccine strains of Fowlpox virus extends open reading frame fpv241 J. Gen. Virol., December 1, 2006; 87(12): 3545 - 3549. [Abstract] [Full Text] [PDF]
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F. Choulet, B. Aigle, A. Gallois, S. Mangenot, C. Gerbaud, C. Truong, F.-X. Francou, C. Fourrier, M. Guerineau, B. Decaris, et al. Evolution of the Terminal Regions of the Streptomyces Linear Chromosome Mol. Biol. Evol., December 1, 2006; 23(12): 2361 - 2369. [Abstract] [Full Text] [PDF]
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N. A. Groathouse, A. Amin, M. A. M. Marques, J. S. Spencer, R. Gelber, D. L. Knudson, J. T. Belisle, P. J. Brennan, and R. A. Slayden Use of Protein Microarrays To Define the Humoral Immune Response in Leprosy Patients and Identification of Disease-State-Specific Antigenic Profiles Infect. Immun., November 1, 2006; 74(11): 6458 - 6466. [Abstract] [Full Text] [PDF]
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A. F. Barbet, A. M. Lundgren, A. R. Alleman, S. Stuen, A. Bjoersdorff, R. N. Brown, N. L. Drazenovich, and J. E. Foley Structure of the Expression Site Reveals Global Diversity in MSP2 (P44) Variants in Anaplasma phagocytophilum Infect. Immun., November 1, 2006; 74(11): 6429 - 6437. [Abstract] [Full Text] [PDF]
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K. Smalla, A. S. Haines, K. Jones, E. Krogerrecklenfort, H. Heuer, M. Schloter, and C. M. Thomas Increased Abundance of IncP-1{beta} Plasmids and Mercury Resistance Genes in Mercury-Polluted River Sediments: First Discovery of IncP-1{beta} Plasmids with a Complex mer Transposon as the Sole Accessory Element Appl. Envir. Microbiol., November 1, 2006; 72(11): 7253 - 7259. [Abstract] [Full Text] [PDF]
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B. Piegu, R. Guyot, N. Picault, A. Roulin, A. Saniyal, H. Kim, K. Collura, D. S. Brar, S. Jackson, R. A. Wing, et al. Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice Genome Res., October 1, 2006; 16(10): 1262 - 1269. [Abstract] [Full Text] [PDF]
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D. M. Bulach, R. L. Zuerner, P. Wilson, T. Seemann, A. McGrath, P. A. Cullen, J. Davis, M. Johnson, E. Kuczek, D. P. Alt, et al. Genome reduction in Leptospira borgpetersenii reflects limited transmission potential PNAS, September 26, 2006; 103(39): 14560 - 14565. [Abstract] [Full Text] [PDF]
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A. S. Haines, P. Akhtar, E. R. Stephens, K. Jones, C. M. Thomas, C. D. Perkins, J. R. Williams, M. J. Day, and J. C. Fry Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype. Microbiology, September 1, 2006; 152(Pt 9): 2689 - 2701. [Abstract] [Full Text] [PDF]
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C. J. McInnes, A. R. Wood, K. Thomas, A. W. Sainsbury, J. Gurnell, F. J. Dein, and P. F. Nettleton Genomic characterization of a novel poxvirus contributing to the decline of the red squirrel (Sciurus vulgaris) in the UK. J. Gen. Virol., August 1, 2006; 87(Pt 8): 2115 - 2125. [Abstract] [Full Text] [PDF]
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|
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M. Sebaihia, A. Preston, D. J. Maskell, H. Kuzmiak, T. D. Connell, N. D. King, P. E. Orndorff, D. M. Miyamoto, N. R. Thomson, D. Harris, et al. Comparison of the Genome Sequence of the Poultry Pathogen Bordetella avium with Those of B. bronchiseptica, B. pertussis, and B. parapertussis Reveals Extensive Diversity in Surface Structures Associated with Host Interaction. J. Bacteriol., August 1, 2006; 188(16): 6002 - 6015. [Abstract] [Full Text] [PDF]
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 |
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 K. Bryson, V. Loux, R. Bossy, P. Nicolas, S. Chaillou, M. van de Guchte, S. Penaud, E. Maguin, M. Hoebeke, P. Bessieres, et al. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system Nucleic Acids Res., July 19, 2006; 34(12): 3533 - 3545. [Abstract] [Full Text] [PDF]
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B.-Y. Lee, M. A. Horwitz, and D. L. Clemens Identification, Recombinant Expression, Immunolocalization in Macrophages, and T-Cell Responsiveness of the Major Extracellular Proteins of Francisella tularensis Infect. Immun., July 1, 2006; 74(7): 4002 - 4013. [Abstract] [Full Text] [PDF]
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C. Kooi, B. Subsin, R. Chen, B. Pohorelic, and P. A. Sokol Burkholderia cenocepacia ZmpB Is a Broad-Specificity Zinc Metalloprotease Involved in Virulence Infect. Immun., July 1, 2006; 74(7): 4083 - 4093. [Abstract] [Full Text] [PDF]
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R. F. Waller, C. H. Slamovits, and P. J. Keeling Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion Protein Mol. Biol. Evol., July 1, 2006; 23(7): 1437 - 1443. [Abstract] [Full Text] [PDF]
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P. R. Gilson, V. Su, C. H. Slamovits, M. E. Reith, P. J. Keeling, and G. I. McFadden From the Cover: Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus PNAS, June 20, 2006; 103(25): 9566 - 9571. [Abstract] [Full Text] [PDF]
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K. Yanai, T. Murakami, and M. Bibb Amplification of the entire kanamycin biosynthetic gene cluster during empirical strain improvement of Streptomyces kanamyceticus PNAS, June 20, 2006; 103(25): 9661 - 9666. [Abstract] [Full Text] [PDF]
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