Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (8)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Murvai, J.
Right arrow Articles by Pongor, S.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Murvai, J.
Right arrow Articles by Pongor, S.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 16 no. 12 2000
Pages 1155-1156
© 2000 Oxford University Press

Applications Note

A simple probabilistic scoring method for protein domain identification

János Murvai , Kristian Vlahoviek and Sándor Pongor

Protein Structure and Function Group, International Centre for Genetic Engineering and Biotechnology, Area Science Park, 34012 Trieste, Italy

Received on July 19, 2000 ; revised on August 16, 2000 ; accepted on August 16, 2000

Summary: A simple heuristic scoring method is described for assigning sequences to known domain types based on BLAST search outputs. The scoring is based on the score distribution of the known domain groups determined from a database versus database comparison and is directly applicable to BLAST output processing.

Availability: The scoring system will be incorporated into the server www.icgeb.trieste.it/sbase/

Contact: murvai{at}icgeb.trieste.it; pongor{at}icgeb.trieste.it


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
K. Vlahovicek, L. Kajan, V. Agoston, and S. Pongor
The SBASE domain sequence resource, release 12: prediction of protein domain-architecture using support vector machines
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D223 - D225.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Vlahovicek, L. Kajan, J. Murvai, Z. Heged""s, and S. Pongor
The SBASE domain sequence library, release 10: domain architecture prediction
Nucleic Acids Res., January 1, 2003; 31(1): 403 - 405.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
K. Vlahovicek, J. Murvai, E. Barta, and S. Pongor
The SBASE protein domain library, release 9.0: an online resource for protein domain identification
Nucleic Acids Res., January 1, 2002; 30(1): 273 - 275.
[Abstract] [Full Text] [PDF]

Home page
 Genome ResHome page
J. Murvai, K. Vlahovicek, C. Szepesvari, and S. Pongor
Prediction of Protein Functional Domains from Sequences Using Artificial Neural Networks
Genome Res., August 1, 2001; 11(8): 1410 - 1417.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.