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Bioinformatics Vol. 17 no. 12 2001
Pages 1230-1231
© 2001 Oxford University Press


Applications Note

Sequence type analysis and recombinational tests (START)

K. A. Jolley *, E. J. Feil , M.-S. Chan and M. C. J. Maiden

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK

Received on April 23, 2001 ; revised on July 19, 2001 ; accepted on July 19, 2001

Summary: The 32-bit Windows application START is implemented using Visual Basic and C++ and performs analyses to aid in the investigation of bacterial population structure using multilocus sequence data. These analyses include data summary, lineage assignment, and tests for recombination and selection.

Availability: START is available at http://outbreak.ceid.ox.ac.uk/software.htm.

Contact: keith.jolley{at}ceid.ox.ac.uk

* To whom correspondence should be addressed.


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