Bioinformatics Vol. 17 no. 12 2001
Pages 1236-1237
© 2001 Oxford University Press
Applications Note |
ProPred: prediction of HLA-DR binding sites
Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh-160036, India
Received on April 24, 2001
; revised on June 21, 2001
; accepted on June 21, 2001
Summary: ProPred is a graphical web tool for predicting MHC class II binding regions in antigenic protein sequences. The server implement matrix based prediction algorithm, employing amino-acid/position coefficient table deduced from literature. The predicted binders can be visualized either as peaks in graphical interface or as colored residues in HTML interface. This server might be a useful tool in locating the promiscuous binding regions that can bind to several HLA-DR alleles.
Availability: The server is available at http://www.imtech.res.in/raghava/propred/
Contact: raghava{at}imtech.res.in
Supplementary information: http://www.imtech.res.in/raghava/propred/page3.html
* To whom correspondence should be addressed.
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