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Bioinformatics Vol. 17 no. 2 2001
Pages 198-199
© 2001 Oxford University Press

Applications Note

COMBOSA3D: combining sequence alignments with three-dimensional structures

P. M. Stothard

Department of Biological Sciences, University of Alberta, Edmonton, Alberta, T6G 2E9, Canada

Received on August 6, 2000 ; revised on October 1, 2000 ; accepted on October 6, 2000

Summary: COMBOSA3D is a program that allows sequence conservation to be viewed in its proper three-dimensional environment. It superimposes sequence alignment information onto a protein structure using a customizable color scheme, which is also applied to a textual sequence alignment for reference.

Availability: The program can be tested at http://www.bioinformatics.org/combosa3d/, and the source code is freely available.

Contact: stothard{at}ualberta.ca

Supplementary information: Additional COMBOSA3D documentation is available at the above URL.


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