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Bioinformatics Vol. 17 no. 4 2001
Pages 379-380
© 2001 Oxford University Press

Applications Note

ProDDO: a database of disordered proteins from the Protein Data Bank (PDB)

Kim Lan Sim 1,*, Tomoyuki Uchida 2 and Satoru Miyano 1

1 Human Genome Center, Institute of Medical Science, University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan
2 Faculty of Information Sciences, Hiroshima City University, Hiroshima 731-3194, Japan

Received on March 2, 2000 ; revised on October 20, 2000 ; accepted on November 1, 2000

Summary: ProDDO represents a ‘pre-screened’ database that denotes disorder (or possible disorder) in proteins from the PDB.

Availability: ProDDO is available at http://bonsai.ims.u-tokyo.ac.jp/~klsim/database.html

Contact: klsim{at}plato.gws.uky.edu

* To whom correspondence should be addressed. Present address: Kentucky Center for Structural Biology, Department of Biochemistry, University of Kentucky, 800 Rose Street, Lexington, KY 40536-0298, USA.


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