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Bioinformatics Vol. 17 no. 6 2001
Pages 571-572
© 2001 Oxford University Press

Applications Note

The HIB database of annotated UniGene clusters

Birgitta Geier 1,2, Gabi Kastenmüller 1, Matthias Fellenberg 1,2, Hans-Werner Mewes 1 and Burkhard Morgenstern 1,*

1 MIPS Instituti für Bioinformatik GSF—Forschungszentrum für Umwelt und Gesundheit, GmbH Ingolstädter Landstraße, 1 85764 Neuherberg, Germany
2 Biomax Informatics AG, Lochhamer Straße 11, 82152 Martinsried, Germany

Received on November 20, 2000 ; revised on February 2, 2001 ; accepted on February 2, 2001

Summary: The HumanInfoBase (HIB) is a database of putative human gene transcripts. UniGene clusters are assembled, and the resulting consensus sequences are submitted to the PEDANT software system (Frishman,D., Albermann,K., Hani,J., Heumann,K., Metanomski,A., Zollner,A. and Mewes,H.-W., 2001, Bioinformatics , 17, 44–57) for fully automatic sequence analysis and annotation. Predicted transcripts are classified using a variety of functional and structural categories, and hyperlinks to various databases are provided for additional information. A WWW-based graphical user interface represents the assembly process as well as functionally important sites in the putative transcripts.

Availability: http://mips.gsf.de/proj/human/

Contact: morgenst{at}mips.gsf.de

* To whom correspondence should be addressed.


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