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Bioinformatics Vol. 17 no. 9 2001
Pages 845-846
© 2001 Oxford University Press

Applications Note

CHROMA: consensus-based colouring of multiple alignments for publication

Leo Goodstadt * and Chris P. Ponting

MRC Functional Genetics Unit, University of Oxford, Department of Human Anatomy and Genetics, South Parks Road, Oxford OX1 3QX, UK

Received on April 6, 2001 ; revised on May 29, 2001 ; accepted on June 5, 2001

CHROMA annotates multiple protein sequence alignments by consensus to produce formatted and coloured text suitable for incorporation into other documents for publication. The package is designed to be flexible and reliable, and has a simple-to-use graphical user interface running under Microsoft Windows. Both the executables and source code for CHROMA running under Windows and Linux (portable command-line only) are freely available at http://www.lg.ndirect.co.uk/chroma. Software enquiries should be directed to CHROMA{at}lg.ndirect.co.uk.

* To whom correspondence should be addressed.


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