Bioinformatics Vol. 17 no. 9 2001
Pages 847-848
© 2001 Oxford University Press
Applications Note |
InterProScan – an integration platform for the signature-recognition methods in InterPro
EMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, , UK
Received on August 2, 2000
; revised on January 12, 2001
; accepted on May 30, 2001
Summary: InterProScan is a tool that scans given protein sequences against the protein signatures of the InterPro member databases, currently – PROSITE, PRINTS, Pfam, ProDom and SMART. The number of signature databases and their associated scanning tools as well as the further refinement procedures make the problem complex. InterProScan is designed to be a scalable and extensible system with a robust internal architecture.
Availability: The Perl-based InterProScan implementation is available from the EBI ftp server (ftp://ftp.ebi.ac.uk/pub/software/unix/iprscan/) and the SRS-basedInterProScan is available upon request. We provide the public web interface (http://www.ebi.ac.uk/interpro/scan.html) as well as email submission server (interproscan{at}ebi.ac.uk).
Contact: Evgueni.Zdobnov{at}EBI.ac.uk
* To whom correspondence should be addressed.
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