Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Comments: Submit a response
Right arrow Alert me when this article is cited
Right arrow Alert me when Comments are posted
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (6)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Lord, P.W.
Right arrow Articles by Attwood, T.K.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Lord, P.W.
Right arrow Articles by Attwood, T.K.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 18 no. 10 2002
Pages 1402-1403
© 2002 Oxford University Press

Applications Note

CINEMA-MX: a modular multiple alignment editor

P.W. Lord 1,*, J.N. Selley 1 and T.K. Attwood 1

1 School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK

Received on January 7, 2002 ; accepted on April 23, 2002

Summary: Analyzing and visualizing multiple sequence alignments is a common task in many areas of molecular biology and bioinformatics. Many tools exist for this purpose, but are not easily customizable for specific in-house uses. Here we report the development of an editor, CINEMA-MX, that addresses these issues. CINEMA-MX is highly modular and configurable, and we present examples to illustrate its extensibility.

Availability: The program and full source code, which are available from http://www.bioinf.man.ac.uk/dbbrowser/cinema-mx, are being released under a combination of the LGPL and GPL, for Unix or Windows platforms.

Contact: p.lord{at}russet.org.uk

* To whom correspondence should be addressed at Department of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PL, UK


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 CSH ProtocolsHome page
D. W. Mount
Using Multiple Sequence Alignment Editors and Formatters
CSH Protocols, July 1, 2009; 2009(7): pdb.top45 - pdb.top45.
[Abstract] [Full Text]

Home page
 J. Biol. Chem.Home page
T. N. Giles and D. E. Graham
Crenarchaeal Arginine Decarboxylase Evolved from an S-Adenosylmethionine Decarboxylase Enzyme
J. Biol. Chem., September 19, 2008; 283(38): 25829 - 25838.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
S. P. Bennett, L. Lu, and D. L. Brutlag
3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs
Nucleic Acids Res., July 1, 2003; 31(13): 3328 - 3332.
[Abstract] [Full Text] [PDF]


Disclaimer: Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.