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Bioinformatics Vol. 18 no. 10 2002
Pages 1402-1403
© 2002 Oxford University Press

Applications Note

CINEMA-MX: a modular multiple alignment editor

P.W. Lord 1,*, J.N. Selley 1 and T.K. Attwood 1

1 School of Biological Sciences, University of Manchester, Oxford Road, Manchester M13 9PL, UK

Received on January 7, 2002 ; accepted on April 23, 2002

Summary: Analyzing and visualizing multiple sequence alignments is a common task in many areas of molecular biology and bioinformatics. Many tools exist for this purpose, but are not easily customizable for specific in-house uses. Here we report the development of an editor, CINEMA-MX, that addresses these issues. CINEMA-MX is highly modular and configurable, and we present examples to illustrate its extensibility.

Availability: The program and full source code, which are available from http://www.bioinf.man.ac.uk/dbbrowser/cinema-mx, are being released under a combination of the LGPL and GPL, for Unix or Windows platforms.

Contact: p.lord{at}russet.org.uk

* To whom correspondence should be addressed at Department of Computer Science, University of Manchester, Oxford Road, Manchester M13 9PL, UK


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