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Bioinformatics Vol. 18 no. 2 2002
Pages 327-328
© 2002 Oxford University Press

Applications Note

CGO: utilizing and integrating gene expression microarray data in clinical research and data management

Klaus Bumm , Mingzhong Zheng , Clyde Bailey , Fenghuang Zhan , M. Chiriva-Internati , Paul Eddlemon , Julian Terry , Bart Barlogie and John D. Shaughnessy, Jr *

Donna D. and Donald M. Lambert Laboratory of Myeloma Genetics and Myeloma & Transplantation Research Center, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA

Received on July 26, 2001 ; revised on September 9, 2001 ; accepted on September 18, 2001

Summary: Clinical GeneOrganizer (CGO) is a novel windows-based archiving, organization and data mining software for the integration of gene expression profiling in clinical medicine. The program implements various user-friendly tools and extracts data for further statistical analysis. This software was written for Affymetrix GeneChip©*.txt files, but can also be used for any other microarray-derived data. The MS-SQL server version acts as a data mart and links microarray data with clinical parameters of any other existing database and therefore represents a valuable tool for combining gene expression analysis and clinical disease characteristics.

Availability: The software is available free of charge at http://lambertlab.uams.edu

Contact: ShaughnessyJohn{at}uams.edu

Supplementary information: A snapshot of detailed program-specific table relationships and information on other programs including various cancer gene expression profiles are available on above mentioned web site.

* To whom correspondence should be addressed.


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