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Bioinformatics Vol. 18 no. 2 2002
Pages 335-336
© 2002 Oxford University Press

Applications Note

GenomePixelizer—a visualization program for comparative genomics within and between species

A. Kozik , E. Kochetkova and R. Michelmore

Department of Vegetable Crops, University of California, Davis, CA 95616, USA

Received on August 28, 2001 ; revised on September 28, 2001 ; accepted on October 12, 2001

Summary: GenomePixelizer is a visualization tool that generates custom images of the physical or genetic positions of specified sets of genes in whole genomes or parts of genomes. Multiple sets of genes can be shown simultaneously with user-defined characteristics displayed. It allows the analysis of duplication events within and between species based on sequence similarities. The program is written in Tcl/Tk and works on any platform that supports the Tcl/Tk toolkit. GenomePixelizer generates HTML ImageMap tags for each gene in the image allowing links to databases. Images can be saved and presented on web pages.

Availability: GenomePixelizer is freely available at http://niblrrs.ucdavis.edu/GenomePixelizer/GenomePixelizer_Welcome.html

Contact: akozik{at}atgc.org


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