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Bioinformatics Vol. 18 no. 3 2002
Pages 488-489
© 2002 Oxford University Press

Applications Note

ProbeMatchDB—a web database for finding equivalent probes across microarray platforms and species

Pinglang Wang , Fei Ding , Hsienyuan Chiang , Robert C. Thompson , Stanley J. Watson and Fan Meng

Department of Psychiatry and Mental Health Research Institute, University of Michigan Medical School, 205 Zina Pitcher Place, Ann Arbor, MI 48109, USA

Received on July 21, 2001 ; revised on October 25, 2001 ; accepted on October 29, 2001

Summary: ProbeMatchDB is a web-based database designed to facilitate the search of EST/cDNA sequences or STS markers that can be used to represent the same gene across different microarray platforms and species. It can be used for finding equivalent EST clones in the Research Genetics sequence verified clone set based on results from Affymetirx GeneChip®s. It will also help to identify probes representing orthologous genes across human, mouse and rat on different microarray platforms.

Availability: The database is accessible at http://brainarray.mhri.med.umich.edu/MARRAY/BC_ASP/brainarray.htm by clicking the ‘Query ProbeMatchDB’ link.

Contact: mengf{at}umich.edu


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