Bioinformatics Vol. 18 no. 4 2002
Pages 631-633
© 2002 Oxford University Press
Applications Note |
CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences
Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558 - UniversitéClaude Bernard, 43, Bd du 11 Novembre 1918, 69622 Villeurbanne Cedex, France
Received on September 7, 2001
; revised on October 23, 2001
; accepted on November 7, 2001
Results: CpGProD is an application for identifying mammalian
promoter regions associated with CpG islands in large genomic
sequences. Although it is strictly dedicated to this particular
promoter class corresponding to 
50% of the genes, CpGProD
exhibits a higher sensitivity and specificity than other tools used
for promoter prediction. Notably, CpGProD uses different parameters
according to species (human, mouse) studied. Moreover, CpGProD
predicts the promoter orientation on the DNA strand.
Availability: http://pbil.univ-lyon1.fr/software/cpgprod.html
Supplementary information: http://pbil.univ-lyon1.fr/software/cpgprod.html
Contact: ponger{at}biomserv.univ-lyon1.fr
* To whom correspondence should be addressed.
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