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Bioinformatics Vol. 18 no. 5 2002
Pages 763-764
© 2002 Oxford University Press

Applications Note

EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database

V. Lombard *, E. B. Camon , H. E. Parkinson , P. Hingamp , G. Stoesser and N. Redaschi

EMBL Outstation The European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK

Received on October 18, 2001 ; revised on December 18, 2001 ; accepted on December 20, 2001

Summary: The submission of multiple sequence alignment data to EMBL has grown 30-fold in the past 10 years, creating a problem of archiving them. The EBI has developed a new public database of multiple sequence alignments called EMBL-Align. It has a dedicated web-based submission tool, Webin-Align. Together they represent a comprehensive data management solution for alignment data. Webin-Align accepts all the common alignment formats and can display data in CLUSTALW format as well as a new standard EMBL-Align flat file format. The alignments are stored in the EMBL-Align database and can be queried from the EBI SRS (Sequence Retrieval System) server.

Availability: Webin-Align: http://www.ebi.ac.uk/embl/Submission/align_top.html, EMBL-Align: ftp://ftp.ebi.ac.uk/pub/databases/embl/align, http://srs.ebi.ac.uk/

Contact: align{at}ebi.ac.uk

* To whom correspondence should be addressed.


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