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Bioinformatics Vol. 18 no. 5 2002
Pages 767-768
© 2002 Oxford University Press

Applications Note

ENDscript: a workflow to display sequence and structure information

Patrice Gouet 1,* and Emmanuel Courcelle 2

1 Laboratoire de Bio-Cristallographie, IBCP-CNRS UMR 5086, 7 passage du Vercors, 69367 Lyon Cedex 07, France
2 Laboratoire de Biologie Moléculaire et des Relations Plantes Microorganismes, BP 27 Chemin de Borde Rouge, 31326 Castanet Tolosan, France

Received on October 16, 2001 ; revised on November 4, 2001 ; accepted on December 17, 2001

Summary: ENDscript is a web server grouping popular programs such as BLAST, Multalin and DSSP. It uses as query the co-ordinates file of a protein in Protein Data Bank format and generates PostScript and png figures showing: residues conserved after a multiple alignment against homologous sequences, secondary structure elements, accessibility, hydropathy and intermolecular contacts. Thus, the user can relate quickly 1D, 2D and 3D information of a protein of known structure.

Availability: http://genopole.toulouse.inra.fr/ENDscript

Contact: p.gouet{at}ibcp.fr

* To whom correspondence should be addressed.


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