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Bioinformatics Vol. 18 no. 7 2002
Pages 1013-1014
© 2002 Oxford University Press

Applications Note

CaGE: Cardiac gene expression knowledgebase

Michael Bober 1,2, Kevin Wiehe 1,3, Christina Yung 1, Tugba Onal Suzek 1,3, Matthew Lin 1, William Baumgartner, Jr 1 and Raimond Winslow 1,*

1 Whitaker Biomedical Engineering Institute, Center for Computational Medicine & Biology, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
2 McKusick-Nathans Institute of Genetic Medicine, Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD 21287, USA
3 Department of Computer Science, The Johns Hopkins University, Baltimore, MD 21218, USA

Received on September 4, 2001 ; revised on January 11, 2002 ; accepted on January 14, 2002

Summary: CaGE is a Cardiac Gene Expression knowledgebase we have developed to facilitate the analysis of genes important to human cardiac function. CaGE integrates the functionality of the LocusLink database with data from several human cardiac expression libraries, phenotypic data from OMIMTM and data from large-scale microarray gene expression studies to create a knowledgebase of gene expression in human cardiac tissue. The knowledgebase is fully searchable via the web using several intuitive query interfaces. Results can be displayed in several concise easy to navigate formats.

Availability: CaGE is located at http://www.cage.wbmei.jhu.edu

Contact: mbbober{at}pol.net; rwinslow{at}bme.jhu.edu

* To whom correspondence should be addressed.


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