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Bioinformatics Vol. 18 no. 9 2002
Pages 1264-1265
© 2002 Oxford University Press

Applications Note

VIZARD: analysis of Affymetrix Arabidopsis GeneChip® data

Nick Moseyko 1,* and Lewis J. Feldman 1

1 Department of Plant and Microbial Biology, University of California at Berkeley, 111 Koshland Hall, Berkeley, CA 94720-3102, USA

Received on November 9, 2001 ; revised on March 23, 2002 ; accepted on April 7, 2002

Summary: The Affymetrix GeneChip® Arabidopsis genome array has proved to be a very powerful tool for the analysis of gene expression in Arabidopsis thaliana, the most commonly studied plant model organism. VIZARD is a Java program created at the University of California, Berkeley, to facilitate analysis of Arabidopsis GeneChip® data. It includes several integrated tools for filtering, sorting, clustering and visualization of gene expression data as well as tools for the discovery of regulatory motifs in upstream sequences. VIZARD also includes annotation and upstream sequence databases for the majority of genes represented on the Affymetrix Arabidopsis GeneChip® array.

Availability: VIZARD is available free of charge for educational, research, and not-for-profit purposes, and can be downloaded at http://www.anm.f2s.com/research/vizard/

Contact: moseyko{at}uclink4.berkeley.edu

* To whom correspondence should be addressed.


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