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Bioinformatics Vol. 18 no. 9 2002
Pages 1272-1273
© 2002 Oxford University Press

Applications Note

OrthoGUI: graphical presentation of Orthostrapper results

Volker Hollich 1, Christian E. V. Storm 1 and Erik L. L Sonnhammer 1,*

1 Center for Genomics and Bioinformatics, Karolinska Institutet, SE-171 77 Stockholm, Sweden

Received on February 22, 2001 ; accepted on April 25, 2002

Summary: Orthostrapper is a program that calculates orthology support values for pairs of sequences in a multiple alignment (Storm and Sonnhammer, Bioinformatics, 18, 92–99, 2002). Here we present OrthoGUI, a web interface and display tool for Orthostrapper analysis. OrthoGUI visualizes the Orthostrapper output in both tabular and tree representations, and can also apply a clustering algorithm to identify groups of multiple orthologs, which are indicated by colour coding.

Availability: http://www.cgb.ki.se/OrthoGUI

Contact: erik.sonnhammer{at}cgb.ki.se

* To whom correspondence should be addressed.


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