Bioinformatics Vol. 19 no. 12 2003
Pages 1572-1574
© 2003 Oxford University Press
Applications Note |
MrBayes 3: Bayesian phylogenetic inference under mixed models
1 Department of Systematic Zoology, Evolutionary Biology
Centre, Uppsala University, Norbyv. 18D, SE-752 36 Uppsala, Sweden
2 Section of Ecology, Behavior and Evolution, Division
of Biological Sciences, University of California, San Diego, La Jolla, CA 92093-0116,
USA
Received on December 20, 2002
; revised on February 14, 2003
; accepted on February 19, 2003
Summary: MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types—e.g. morphological, nucleotide, and protein—and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
Availability: http://morphbank.ebc.uu.se/mrbayes
Contact: fredrik.ronquist{at}ebc.uu.se
* To whom correspondence should be addressed.
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