Bioinformatics Vol. 19 no. 12 2003
Pages 1572-1574
© 2003 Oxford University Press
Applications Note |
MrBayes 3: Bayesian phylogenetic inference under mixed models
1 Department of Systematic Zoology, Evolutionary Biology
Centre, Uppsala University, Norbyv. 18D, SE-752 36 Uppsala, Sweden
2 Section of Ecology, Behavior and Evolution, Division
of Biological Sciences, University of California, San Diego, La Jolla, CA 92093-0116,
USA
Received on December 20, 2002
; revised on February 14, 2003
; accepted on February 19, 2003
Summary: MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types—e.g. morphological, nucleotide, and protein—and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.
Availability: http://morphbank.ebc.uu.se/mrbayes
Contact: fredrik.ronquist{at}ebc.uu.se
* To whom correspondence should be addressed.
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J. Blaszkowski, G. M. Kovacs, and T. Balazs Glomus perpusillum, a new arbuscular mycorrhizal fungus Mycologia, March 1, 2009; 101(2): 247 - 255. [Abstract] [Full Text] [PDF]
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M. Romeralo, S.L. Baldauf, and J.C. Cavender A new species of cellular slime mold from southern Portugal based on morphology, ITS and SSU sequences Mycologia, March 1, 2009; 101(2): 269 - 274. [Abstract] [Full Text] [PDF]
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G. J. Binford, M. R. Bodner, M. H.J. Cordes, K. L. Baldwin, M. R. Rynerson, S. N. Burns, and P. A. Zobel-Thropp Molecular Evolution, Functional Variation, and Proposed Nomenclature of the Gene Family That Includes Sphingomyelinase D in Sicariid Spider Venoms Mol. Biol. Evol., March 1, 2009; 26(3): 547 - 566. [Abstract] [Full Text] [PDF]
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H. D. Marshall, M. W. Coulson, and S. M. Carr Near Neutrality, Rate Heterogeneity, and Linkage Govern Mitochondrial Genome Evolution in Atlantic Cod (Gadus morhua) and Other Gadine Fish Mol. Biol. Evol., March 1, 2009; 26(3): 579 - 589. [Abstract] [Full Text] [PDF]
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M. Turmel, M.-C. Gagnon, C. J. O'Kelly, C. Otis, and C. Lemieux The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids Mol. Biol. Evol., March 1, 2009; 26(3): 631 - 648. [Abstract] [Full Text] [PDF]
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J. A Jurado-Rivera, A. P Vogler, C. A.M Reid, E. Petitpierre, and J. Gomez-Zurita DNA barcoding insect-host plant associations Proc R Soc B, February 22, 2009; 276(1657): 639 - 648. [Abstract] [Full Text] [PDF]
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M. Mandic, A. E Todgham, and J. G Richards Mechanisms and evolution of hypoxia tolerance in fish Proc R Soc B, February 22, 2009; 276(1657): 735 - 744. [Abstract] [Full Text] [PDF]
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A. Petrusek, R. Tollrian, K. Schwenk, A. Haas, and C. Laforsch From the Cover: A "crown of thorns" is an inducible defense that protects Daphnia against an ancient predator PNAS, February 17, 2009; 106(7): 2248 - 2252. [Abstract] [Full Text] [PDF]
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 J. Takehisa, M. H. Kraus, A. Ayouba, E. Bailes, F. Van Heuverswyn, J. M. Decker, Y. Li, R. S. Rudicell, G. H. Learn, C. Neel, et al. Origin and Biology of Simian Immunodeficiency Virus in Wild-Living Western Gorillas J. Virol., February 15, 2009; 83(4): 1635 - 1648. [Abstract] [Full Text] [PDF]
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