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Bioinformatics Vol. 19 no. 13 2003
Pages 1718-1719
© 2003 Oxford University Press

Applications Note

FindGDPs: identification of primers for labeling microbial transcriptomes for DNA microarray analysis

Robert J. Blick , Andrew T. Revel and Eric J. Hansen *

Department of Microbiology, University of Texas Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9048, USA

Received on October 17, 2002 ; revised on February 7, 2003 ; accepted on February 25, 2003

Summary: FindGDPs is a program that uses a greedy algorithm to quickly identify a set of genome-directed primers that specifically anneal to all of the open reading frames in a genome and that do not exhibit full-length complementarity to the members of another user-supplied set of nucleotide sequences.

Availability: The program code is distributed under the GNU General Public License at http://www3.utsouthwestern.edu/microbiology/pages/faculty/hansen.html

Contact: eric.hansen{at}utsouthwestern.edu

* To whom correspondence should be addressed.


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