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Bioinformatics Vol. 19 no. 13 2003
Pages 1720-1722
© 2003 Oxford University Press

Applications Note

ESTAP—an automated system for the analysis of EST data

Chunhong Mao 1,*, John C. Cushman 2, Gregory D. May 3 and Jennifer W. Weller 1,4

1 Virginia Bioinformatics Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA, 2 Department of Biochemistry, University of Nevada, Reno, NV 89557, USA, 3 Plant Biology Division, The Samuel Roberts Noble Foundation, Ardmore, OK 73402, USA and 4 School of Computational Sciences, George Mason University, Manassas, VA 20110, USA

Received on October 25, 2002 ; revised on February 27, 2003 ; accepted on March 10, 2003

Summary: The EST Analysis Pipeline (ESTAP) is a set of analytical procedures that automatically verify, cleanse, store and analyze ESTs generated on high-throughput platforms. It uses a relational database to store sequence data and analysis results, which facilitates both the search for specific information and statistical analysis. ESTAP provides for easy viewing of the original and cleansed data, as well as the analysis results via a Web browser. It also allows the data owner to submit selected sequences to dbEST in a semi-automated fashion.

Availablity: http://www.vbi.vt.edu/~estap

Contact: chmao{at}vt.edu

* To whom correspondence should be addressed.


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