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Bioinformatics Vol. 19 no. 13 2003
Pages 1723-1725
© 2003 Oxford University Press

Applications Note

ProSAT: functional annotation of protein 3D structures

Razif R. Gabdoulline *, René Hoffmann , Florian Leitner and Rebecca C. Wade

European Media Laboratory, Schloss-Wolfsbrunnenweg 33, 69118 Heidelberg, Germany

Received on November 20, 2002 ; revised on February 25, 2003 ; accepted on March 24, 2003

Summary: ProSAT (for Protein Structure Annotation Tool) is a tool to facilitate interactive visualization of non-structure-based functional annotations in protein 3D structures. It performs automated mapping of the functional annotations onto the protein structure and allows functional sites to be readily identified upon visualization. The current version of ProSAT can be applied to large datasets of protein structures for fast visual identification of active and other functional sites derived from the SwissProt and Prosite databases.

Availability: http://projects.villa-bosch.de/mcm/database/prosat/

Contact: razif.gabdoulline{at}eml.villa-bosch.de

* To whom correspondence should be addressed.


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Home page
 Nucleic Acids ResHome page
R. R. Gabdoulline, S. Ulbrich, S. Richter, and R. C. Wade
ProSAT2--Protein Structure Annotation Server.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W79 - W83.
[Abstract] [Full Text] [PDF]


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