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Bioinformatics Vol. 19 no. 14 2003
Pages 1854-1855
© 2003 Oxford University Press

Applications Note

Batch mode generation of residue-based diagrams of proteins

Fabien Campagne 1,*, Emmanuel Bettler 2, Gert Vriend 2 and Harel Weinstein 1

1 Institute for Computational Biomedicine and Department of Physiology and Biophysics, Mount Sinai School of Medicine, Box 1218, New York, NY 10029, USA, 2 Centre for Molecular and Biomolecular Informatics, University of Nijmegen, Toernooiveld 1, P.O. Box 9010, 6500 GL Nijmegen, The Netherlands

Received on December 31, 2002 ; revised on March 6, 2003 ; accepted on April 2, 2003

Summary: Residue-based diagrams of proteins are graphical representations that can be used in protein information systems. These diagrams make it possible to visually integrate different types of biological information. The approach has been used successfully for membrane proteins. We developed the Residue-based diagram generator to (i) make it possible to generate residue-based diagrams of proteins in a batch mode that is compatible with the needs of information system curators, (ii) allow the generation of residue-based diagrams for families of soluble proteins or domains.

Availability: Licensed. Royalty free licenses are granted to non-profit institutions for educational and research purposes. http://icb.mssm.edu/crt/RbDg/index.xml

Contact: Fabien.Campagne{at}mssm.edu

* To whom correspondence should be addressed.


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