Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (33)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Puvanendrampillai, D.
Right arrow Articles by Mitchell, J. B. O.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Puvanendrampillai, D.
Right arrow Articles by Mitchell, J. B. O.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 19 no. 14 2003
Pages 1856-1857
© 2003 Oxford University Press

Applications Note

Protein Ligand Database (PLD): additional understanding of the nature and specificity of protein–ligand complexes

Dushyanthan Puvanendrampillai and John B. O. Mitchell *

Unilever Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK

Received on October 3, 2002 ; revised on March 24, 2003 ; accepted on April 7, 2003

Summary: The Protein Ligand Database (PLD) is a publicly available web-based database that aims to provide further understanding of protein–ligand interactions. The PLD contains biomolecular data including calculated binding energies, Tanimoto ligand similarity scores and protein percentage sequence similarities. The database has potential for application as a tool in molecular design.

Availability: http://www-mitchell.ch.cam.ac.uk/pld/

Contact: jbom1{at}cam.ac.uk

* To whom correspondence should be addressed.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
S. Grandison and R. J. Morris
Biological pathway kinetic rate constants are scale-invariant
Bioinformatics, March 15, 2008; 24(6): 741 - 743.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
M. L. Benson, R. D. Smith, N. A. Khazanov, B. Dimcheff, J. Beaver, P. Dresslar, J. Nerothin, and H. A. Carlson
Binding MOAD, a high-quality protein ligand database
Nucleic Acids Res., January 11, 2008; 36(suppl_1): D674 - D678.
[Abstract] [Full Text] [PDF]

Home page
 BioinformaticsHome page
N. Bhardwaj, R. V. Stahelin, G. Zhao, W. Cho, and H. Lu
MeTaDoR: a comprehensive resource for membrane targeting domains and their host proteins
Bioinformatics, November 15, 2007; 23(22): 3110 - 3112.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
G. Lopez, A. Valencia, and M. Tress
FireDB--a database of functionally important residues from proteins of known structure
Nucleic Acids Res., January 12, 2007; 35(suppl_1): D219 - D223.
[Abstract] [Full Text] [PDF]

Home page
 Biophys. JHome page
G. Fiorin, A. Pastore, P. Carloni, and M. Parrinello
Using Metadynamics to Understand the Mechanism of Calmodulin/Target Recognition at Atomic Detail
Biophys. J., October 15, 2006; 91(8): 2768 - 2777.
[Abstract] [Full Text] [PDF]

Home page
 Biophys. JHome page
S. O. Yesylevskyy, V. N. Kharkyanen, and A. P. Demchenko
The Change of Protein Intradomain Mobility on Ligand Binding: Is It a Commonly Observed Phenomenon?
Biophys. J., October 15, 2006; 91(8): 3002 - 3013.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
P. Block, C. A. Sotriffer, I. Dramburg, and G. Klebe
AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB
Nucleic Acids Res., January 1, 2006; 34(suppl_1): D522 - D526.
[Abstract] [Full Text] [PDF]

Home page
 Nucleic Acids ResHome page
J.-M. Shin and D.-H. Cho
PDB-Ligand: a ligand database based on PDB for the automated and customized classification of ligand-binding structures
Nucleic Acids Res., January 1, 2005; 33(suppl_1): D238 - D241.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.