Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (47)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Nikitin, A.
Right arrow Articles by Mazo, I.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Nikitin, A.
Right arrow Articles by Mazo, I.
Social Bookmarking
 Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 19 no. 16 2003
pages 2155-2157
© 2003 Oxford University Press


Applications Note

Pathway studio—the analysis and navigation of molecular networks

Alexander Nikitin , Sergei Egorov , Nikolai Daraselia and Ilya Mazo *

Ariadne Genomics, Inc., 9700 Great Seneca Hgwy, Rockville, MD 20850, USA

Received on December 6, 2002 ; revised on April 7, 2003 ; accepted on April 29, 2003

Summary: PathwayAssist is a software application developed for navigation and analysis of biological pathways, gene regulation networks and protein interaction maps. It comes with the built-in natural language processing module MedScan and the comprehensive database describing more than 100 000 events of regulation, interaction and modification between proteins, cell processes and small molecules.

Availability: PathwayAssist is available for commercial licensing from Ariadne Genomics, Inc. The light version with limited functionality will be available for free for academic users at www.ariadnegenomics.com/downloads/

Contact: mazo{at}ariadnegenomics.com

* To whom correspondence should be addressed.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
Mol. Cell. ProteomicsHome page
M. Abu-Farha, J.-P. Lambert, A. S. Al-Madhoun, F. Elisma, I. S. Skerjanc, and D. Figeys
The Tale of Two Domains: Proteomics and Genomics Analysis of SMYD2, A New Histone Methyltransferase
Mol. Cell. Proteomics, March 1, 2008; 7(3): 560 - 572.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
M. Suderman and M. Hallett
Tools for visually exploring biological networks
Bioinformatics, October 15, 2007; 23(20): 2651 - 2659.
[Abstract] [Full Text] [PDF]


Home page
Genome Res.Home page
S. Draghici, P. Khatri, A. L. Tarca, K. Amin, A. Done, C. Voichita, C. Georgescu, and R. Romero
A systems biology approach for pathway level analysis
Genome Res., October 1, 2007; 17(10): 1537 - 1545.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
P. Khatri, C. Voichita, K. Kattan, N. Ansari, A. Khatri, C. Georgescu, A. L. Tarca, and S. Draghici
Onto-Tools: new additions and improvements in 2006
Nucleic Acids Res., July 13, 2007; 35(suppl_2): W206 - W211.
[Abstract] [Full Text] [PDF]


Home page
Toxicol PatholHome page
C. G. Woods, J. P. Vanden Heuvel, and I. Rusyn
Genomic Profiling in Nuclear Receptor-Mediated Toxicity
Toxicol Pathol, June 1, 2007; 35(4): 474 - 494.
[Abstract] [PDF]


Home page
Hum Mol GenetHome page
A. E. Platts, D. J. Dix, H. E. Chemes, K. E. Thompson, R. Goodrich, J. C. Rockett, V. Y. Rawe, S. Quintana, M. P. Diamond, L. F. Strader, et al.
Success and failure in human spermatogenesis as revealed by teratozoospermic RNAs
Hum. Mol. Genet., April 1, 2007; 16(7): 763 - 773.
[Abstract] [Full Text] [PDF]


Home page
J. Immunol.Home page
F. O. Martinez, S. Gordon, M. Locati, and A. Mantovani
Transcriptional Profiling of the Human Monocyte-to-Macrophage Differentiation and Polarization: New Molecules and Patterns of Gene Expression
J. Immunol., November 15, 2006; 177(10): 7303 - 7311.
[Abstract] [Full Text] [PDF]


Home page
Infect. Immun.Home page
C. F. Ockenhouse, W.-c. Hu, K. E. Kester, J. F. Cummings, A. Stewart, D. G. Heppner, A. E. Jedlicka, A. L. Scott, N. D. Wolfe, M. Vahey, et al.
Common and divergent immune response signaling pathways discovered in peripheral blood mononuclear cell gene expression patterns in presymptomatic and clinically apparent malaria.
Infect. Immun., October 1, 2006; 74(10): 5561 - 5573.
[Abstract] [Full Text] [PDF]


Home page
Mol. Cell. ProteomicsHome page
H. B. Pollard, O. Eidelman, C. Jozwik, W. Huang, M. Srivastava, X. D. Ji, B. McGowan, C. F. Norris, T. Todo, T. Darling, et al.
De Novo Biosynthetic Profiling of High Abundance Proteins in Cystic Fibrosis Lung Epithelial Cells
Mol. Cell. Proteomics, September 1, 2006; 5(9): 1628 - 1637.
[Abstract] [Full Text] [PDF]


Home page
Nucleic Acids ResHome page
M. Baitaluk, M. Sedova, A. Ray, and A. Gupta
BiologicalNetworks: visualization and analysis tool for systems biology.
Nucleic Acids Res., July 1, 2006; 34(Web Server issue): W466 - W471.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
J. Kohler, J. Baumbach, J. Taubert, M. Specht, A. Skusa, A. Ruegg, C. Rawlings, P. Verrier, and S. Philippi
Graph-based analysis and visualization of experimental results with ONDEX
Bioinformatics, June 1, 2006; 22(11): 1383 - 1390.
[Abstract] [Full Text] [PDF]


Home page
BioinformaticsHome page
X.-w. Chen, G. Anantha, and X. Wang
An effective structure learning method for constructing gene networks
Bioinformatics, June 1, 2006; 22(11): 1367 - 1374.
[Abstract] [Full Text] [PDF]


Home page
J. Biol. Chem.Home page
Y. Xu, C. Liu, J. C. Clark, and J. A. Whitsett
Functional Genomic Responses to Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) and CFTR{Delta}508 in the Lung
J. Biol. Chem., April 21, 2006; 281(16): 11279 - 11291.
[Abstract] [Full Text] [PDF]



Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.