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Bioinformatics Vol. 19 no. 17 2003
pages 2311-2312
© 2003 Oxford University Press

Applications Note

TSGDB: a database system for tumor suppressor genes

Yanming Yang 1 and Li M. Fu 1,2,*

1 University of Florida, Gainesville, FL, USA and 2 Pacific Tuberculosis and Cancer Research Organization, Los Angeles, CA, USA

Received on February 8, 2003 ; revised on April 22, 2003 ; accepted on May 23, 2003

Summary: A Web-based database system was constructed and implemented that contains 174 tumor suppressor genes. The database homepage was created to accommodate these genes in a pull-down window so that each gene can be viewed individually in a separate Web page. Information displayed on each page includes gene name, aliases, source organism, chromosome location, expression cells/tissues, gene structure, protein size, gene functions and major reference sources. Queries to the database can be conducted through a user-friendly interface, and query results are returned in the HTML format on dynamically generated web pages.

Availability: The database is available at http://www.cise.ufl.edu/~yy1/HTML-TSGDB/Homepage.html (data files also at http://www.patcar.org/Databases/Tumor_Suppressor_Genes)

Contact: lifu{at}patcar.org

* To whom correspondence should be addressed.


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