Skip Navigation

This Article
Right arrow FREE Full Text (Print PDF) Freely available
Right arrow FREE Full Text (Screen PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in ISI Web of Science
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Add to My Personal Archive
Right arrow Download to citation manager
Right arrow Search for citing articles in:
ISI Web of Science (2)
Right arrowRequest Permissions
Google Scholar
Right arrow Articles by Abril, J. F.
Right arrow Articles by Wiehe, T.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Abril, J. F.
Right arrow Articles by Wiehe, T.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us  
What's this?

Bioinformatics Vol. 19 no. 18 2003
pages 2477-2479
© 2003 Oxford University Press

Applications Note

gff2aplot: Plotting sequence comparisons

Josep F. Abril 1,*, Roderic Guigó 1 and Thomas Wiehe 2,{dagger}

1 Grup de Recerca en Informàtica Biomèdica, Institut Municipal d'Investigació Mèdica (IMIM) Universitat Pompeu Fabra (UPF)—Centre de Regulació Genòmica (CRG), Passeig Marítim de la Barceloneta 37–49, 08003 Barcelona, Catalonia, Spain and 2 Freie Universität Berlin, Arnimallee 22, 14195 Berlin, Germany

Received on March 4, 2003 ; revised on June 11, 2003 ; accepted on June 20, 2003

Summary: gff2aplot is a program to visualize the alignment of two sequences together with their annotations. Input for the program consists of single or multiple files in GFF-format which specify the alignment coordinates and annotation features of both sequences. Output is in PostScript format of any size. The features to be displayed are highly customizable to meet user specific needs. The program serves to generate print-quality images for comparative genome sequence analysis.

Availability: gff2aplot is freely available under the GNU software licence and can be downloaded from the address specified below.

Supplementary information: http://genome.imim.es/software/gfftools/GFF2APLOT.html

Contact: jabril{at}imim.es

* To whom correspondence should be addressed.

{dagger} Current Address: Universität zu Köln, Institut für Genetik, Weyertal 121, 50931 Köln, Germany.


Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us    What's this?


This article has been cited by other articles:


Home page
 BioinformaticsHome page
R. Engels, T. Yu, C. Burge, J. P. Mesirov, D. DeCaprio, and J. E. Galagan
Combo: a whole genome comparative browser
Bioinformatics, July 15, 2006; 22(14): 1782 - 1783.
[Abstract] [Full Text] [PDF]


Disclaimer:
Please note that abstracts for content published before 1996 were created through digital scanning and may therefore not exactly replicate the text of the original print issues. All efforts have been made to ensure accuracy, but the Publisher will not be held responsible for any remaining inaccuracies. If you require any further clarification, please contact our Customer Services Department.