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Bioinformatics Vol. 19 no. 18 2003
pages 2494-2495
© 2003 Oxford University Press

Applications Note

Machaon CVE: cluster validation for gene expression data

Nadia Bolshakova 1,* and Francisco Azuaje 2

1 Department of Computer Science, Trinity College Dublin, Dublin 2, Ireland and 2 School of Computing and Mathematics, University of Ulster, Jordanstown, Northern Ireland, UK

Received on January 24, 2003 ; revised on April 23, 2003 ; accepted on June 30, 2003

Summary: This paper presents a cluster validation tool for gene expression data. Machaon CVE (Clustering and Validation Environment) system aims to partition samples or genes into groups characterized by similar expression patterns, and to evaluate the quality of the clusters obtained.

Availability: The program is freely available for non-profit use on request at http://www.cs.tcd.ie/Nadia.Bolshakova/Machaon.html

Supplementary information: http://www.cs.tcd.ie/Nadia.Bolshakova/Machaon.html

Contact: Nadia.Bolshakova{at}cs.tcd.ie

* To whom correspondence should be addressed.


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