Bioinformatics Vol. 19 no. 2 2003
Pages 311-312
© 2003 Oxford University Press
Applications Note |
TopDraw: a sketchpad for protein structure topology cartoons
Division of Biological Chemistry and Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee, DD1 5EH, Scotland
Received on August 23, 2002
; revised on September 16, 2002
; accepted on September 16, 2002
Summary: Protein topology cartoons are a representation of structural data commonly used by structural biologists to illustrate the relationship between one-dimensional sequence and three-dimensional structural data in a convenient two-dimensional format. TopDraw is a simple, freely available TCL/Tk based drawing program designed specifically for the production of publication quality topology cartoons in a style commonly presented by structural biologists.
Availability: TopDraw is freely available under the terms of the GNU General Public License. It can be downloaded from http://stein.bioch.dundee.ac.uk/~charlie/scripts/topdraw.html.
Contact: C.S.Bond{at}dundee.ac.uk
CiteULike 
Connotea 
Del.icio.us What's this?
This article has been cited by other articles:
|
|
 |
|
  M. M. Phelan, C.-T. Thai, D. C. Soares, R. T. Ogata, P. N. Barlow, and J. Bramham Solution Structure of Factor I-like Modules from Complement C7 Reveals a Pair of Follistatin Domains in Compact Pseudosymmetric Arrangement J. Biol. Chem., July 17, 2009; 284(29): 19637 - 19649. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 P. Zhou and Z. Shang 2D molecular graphics: a flattened world of chemistry and biology Brief Bioinform, May 1, 2009; 10(3): 247 - 258. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Crawford, O. Grujic, E. Bruic, M. Czjzek, M. E. Grigg, and M. J. Boulanger Structural Characterization of the Bradyzoite Surface Antigen (BSR4) from Toxoplasma gondii, a Unique Addition to the Surface Antigen Glycoprotein 1-related Superfamily J. Biol. Chem., April 3, 2009; 284(14): 9192 - 9198. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Hurtado-Guerrero, A. W. Schuttelkopf, I. Mouyna, A. F. M. Ibrahim, S. Shepherd, T. Fontaine, J.-P. Latge, and D. M. F. van Aalten Molecular Mechanisms of Yeast Cell Wall Glucan Remodeling J. Biol. Chem., March 27, 2009; 284(13): 8461 - 8469. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Ramazzina, L. Cendron, C. Folli, R. Berni, D. Monteverdi, G. Zanotti, and R. Percudani Logical Identification of an Allantoinase Analog (puuE) Recruited from Polysaccharide Deacetylases J. Biol. Chem., August 22, 2008; 283(34): 23295 - 23304. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Horst, W. A. Fenton, S. W. Englander, K. Wuthrich, and A. L. Horwich Folding trajectories of human dihydrofolate reductase inside the GroEL-GroES chaperonin cavity and free in solution PNAS, December 26, 2007; 104(52): 20788 - 20792. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. K. Simanshu, H. S. Savithri, and M. R. N. Murthy Crystal Structures of Salmonella typhimurium Biodegradative Threonine Deaminase and Its Complex with CMP Provide Structural Insights into Ligand-induced Oligomerization and Enzyme Activation J. Biol. Chem., December 22, 2006; 281(51): 39630 - 39641. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Yu, Y.-H. Liang, E. Brostromer, J.-M. Quan, S. Panjikar, Y.-H. Dong, and X.-D. Su A Catalytic Mechanism Revealed by the Crystal Structures of the Imidazolonepropionase from Bacillus subtilis J. Biol. Chem., December 1, 2006; 281(48): 36929 - 36936. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. H. C. Godoi, R. S. Galhardo, D. D. Luche, M.-A. Van Sluys, C. F. M. Menck, and G. Oliva Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana J. Biol. Chem., October 13, 2006; 281(41): 30957 - 30966. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Ricagno, M.-P. Egloff, R. Ulferts, B. Coutard, D. Nurizzo, V. Campanacci, C. Cambillau, J. Ziebuhr, and B. Canard Crystal structure and mechanistic determinants of SARS coronavirus nonstructural protein 15 define an endoribonuclease family PNAS, August 8, 2006; 103(32): 11892 - 11897. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. E. Blair, A. W. Schuttelkopf, J. I. MacRae, and D. M. F. van Aalten Structure and metal-dependent mechanism of peptidoglycan deacetylase, a streptococcal virulence factor PNAS, October 25, 2005; 102(43): 15429 - 15434. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Michalska, K. Brzezinski, and M. Jaskolski Crystal Structure of Isoaspartyl Aminopeptidase in Complex with L-Aspartate J. Biol. Chem., August 5, 2005; 280(31): 28484 - 28491. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Vaaje-Kolstad, D. R. Houston, A. H. K. Riemen, V. G. H. Eijsink, and D. M. F. van Aalten Crystal Structure and Binding Properties of the Serratia marcescens Chitin-binding Protein CBP21 J. Biol. Chem., March 25, 2005; 280(12): 11313 - 11319. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. McLuskey, J. A. Harrison, A. W. Schuttelkopf, D. H. Boxer, and W. N. Hunter Insight into the Role of Escherichia coli MobB in Molybdenum Cofactor Biosynthesis Based on the High Resolution Crystal Structure J. Biol. Chem., June 20, 2003; 278(26): 23706 - 23713. [Abstract] [Full Text] [PDF]
|
|