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Bioinformatics Vol. 19 no. 3 2003
Pages 425-426
© 2003 Oxford University Press

Applications Note

AltAVisT: Comparing alternative multiple sequence alignments

Burkhard Morgenstern 1,*, Sachin Goel 1, Alexander Sczyrba 2 and Andreas Dress 3

1 International Graduate School in Bioinformatics and Genome Research
2 Faculty of Technology, Research Group in Practical Computer Science
3 Department of Mathematics, University of Bielefeld, Postfach 10 01 31, 33501 Bielefeld, Germany

Received on July 18, 2002 ; revised on September 18, 2002 ; accepted on September 28, 2002

Summary: We introduce a WWW-based tool that is able to compare two alternative multiple alignments of a given sequence set. Regions where both alignments coincide are color-coded to visualize the local agreement between the two alignments and to identify those regions that can be considered to be reliably aligned.

Availability: http://bibiserv.techfak.uni-bielefeld.de/altavist/

Contact: burkhard{at}TechFak.Uni-Bielefeld.DE

* To whom correspondence should be addressed.


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