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Bioinformatics Vol. 19 no. 6 2003
Pages 778-779
© 2003 Oxford University Press

Applications Note

PGAGENE: integrating quantitative gene-specific results from the NHLBI Programs for Genomic Applications

Kyungjoon Lee , Isaac S. Kohane and Atul J. Butte *

Children’s Hospital Informatics Program, 300 Longwood Ave, Boston, MA 02115, USA

Received on October 8, 2002 ; revised on December 2, 2002 ; accepted on December 9, 2002

Summary: PGAGENE is a web-based gene-specific genomic data search engine, which allows users to search over 5.9 million pieces of collective genetic and genomic data from the NHLBI supported Programs for Genomic Applications. This data includes microarray measurements, SNPs, and mutations, and data may be found using symbols, parts of gene names or products, Affymetrix probe IDs, GenBank accession numbers, UniGene IDs, dbSNP IDs, and others. The PGAGENE indexing agent periodically maps all publicly available gene-specific PGA data onto LocusLink using dynamically generated cross-referencing tables.

Availability: http://pgagene.chip.org

Contact: atul_butte{at}harvard.edu

* To whom correspondence should be addressed.


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