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Bioinformatics Vol. 19 no. 6 2003
Pages 780-781
© 2003 Oxford University Press

Applications Note

Perfect phylogeny haplotyper: haplotype inferral using a tree model

Ren Hua Chung and Dan Gusfield *

Department of Computer Science, 3051 Engineering II, University of California, One Shields Avenue, Davis, CA 95616, USA

Received on September 11, 2002 ; revised on November 15, 2002 ; accepted on November 27, 2002

Summary: We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.

Availability: Executable code for four common platforms is available at: http://wwwcsif.cs.ucdavis.edu/~gusfield

Contact: gusfield{at}cs.ucdavis.edu

* To whom correspondence should be addressed.


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