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Bioinformatics Vol. 19 no. 6 2003
Pages 786-787
© 2003 Oxford University Press

Applications Note

Java editor for biological pathways

Elmar Trost , Hubert Hackl , Michael Maurer and Zlatko Trajanoski *

Institute of Biomedical Engineering and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Krenngasse 37, 8010 Graz, Austria

Received on August 30, 2002 ; revised on October 23, 2002 ; accepted on November 13, 2002

Summary: A visual Java-based tool for drawing and annotating biological pathways was developed. This tool integrates the possibilities of charting elements with different attributes (size, color, labels), drawing connections between elements in distinct characteristics (color, structure, width, arrows), as well as adding links to molecular biology databases, promoter sequences, information on the function of the genes or gene products, and references. It is easy to use and system independent. The result of the editing process is a PNG (portable network graphics) file for the images and XML (extended markup language) file for the appropriate links.

Availability: http://genome.tugraz.at

Contact: zlatko.trajanoski{at}tugraz.at

* To whom correspondence should be addressed.


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This article has been cited by other articles:


Home page
 Nucleic Acids ResHome page
B. Mlecnik, M. Scheideler, H. Hackl, J. Hartler, F. Sanchez-Cabo, and Z. Trajanoski
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Nucleic Acids Res., July 1, 2005; 33(suppl_2): W633 - W637.
[Abstract] [Full Text] [PDF]


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