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Bioinformatics Vol. 19 no. 6 2003
Pages 788-789
© 2003 Oxford University Press

Applications Note

GoFish finds genes with combinations of Gene Ontology attributes

Gabriel F. Berriz 1, James V. White 2,3, Oliver D. King 1 and Frederick P. Roth 1,*

1 Harvard Medical School, Department of Biological Chemistry and Molecular Pharmacology, 250 Longwood Avenue, Boston, MA 02115
2 JVWhite.Com, 5 Kelly Road, Cambridge, MA 02139, USA
3 Boston University, Department of Biomedical Engineering, 44 Cummington Street, Boston, MA 02215, USA

Received on August 26, 2002 ; revised on November 20, 2002 ; accepted on December 13, 2002

Summary: GoFish is a Java application that allows users to search for gene products with particular gene ontology (GO) attributes, or combinations of attributes. GoFish ranks gene products by the degree to which they satisfy a Boolean query. Four organisms are currently supported: Saccaromyces cerevisiae, Caenorhabditis elegans, Drosophila melanogaster, and M.musculus.

Availability: GoFish can be used freely through the www as a Java applet for Windows, Mac OS X, or Unix: http://llama.med.harvard.edu/Software.html.

Contact: fritz_roth{at}hms.harvard.edu

* To whom correspondence should be addressed.


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