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Bioinformatics Vol. 19 no. 7 2003
Pages 899-900
© 2003 Oxford University Press

Applications Note

SCide: identification of stabilization centers in proteins

Zsuzsanna Dosztányi , Csaba Magyar , Gábor Tusnády and István Simon *

Institute of Enzymology Biological Research Center, Hungarian Academy of Sciences, PO Box 7, Budapest, H-1518, Hungary.

Received on November 3, 2002 ; revised on January 9, 2003 ; accepted on January 14, 2003

Summary: SCide is a program to identify stabilization centers from known protein structures. These are residues involved in cooperative long-range contacts, which can be formed between various regions of a single polypeptide chain, or they can belong to different peptides or polypeptides in a complex. The server takes a PDB file as an input, and the result is presented in graphical or text format.

Availability: SCide is available on the web at http://www.enzim.hu/scide. The source code can be obtained from the authors on request.

Contact: zsuzsa{at}enzim.hu

* To whom correspondence should be addressed.


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