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Bioinformatics Vol. 19 no. 8 2003
Pages 1039-1040
© 2003 Oxford University Press

Applications Note

ACGT—a comparative genomics tool

Tao Xie * and Leroy Hood

Institute for Systems Biology, 1441 North 34th Street, Seattle, WA 98103, USA

Received on October 15, 2002 ; revised on January 3, 2003 ; accepted on January 14, 2003

Summary: ACGT (a comparative genomics tool) is a genomic DNA sequence comparison viewer and analyzer. It can read a pair of DNA sequences in GenBank, Embl or Fasta formats, with or without a comparison file, and provide users with many options to view and analyze the similarities between the input sequences. It is written in Java and can be run on Unix, Linux and Windows platforms.

Availability: The ACGT program is freely available with documentation and examples at website: http://db.systemsbiology.net/projects/local/mhc/acgt/

Contact: txie{at}systemsbiology.org

* To whom correspondence should be addressed.


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