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Vol. 20 no. 1 2004, pages 125-126
Bioinformatics © Oxford University Press 2004; all rights reserved.

Applications Note

HOMGL—comparing genelists across species and with different accession numbers

Nils Blüthgen *, Szymon M. Kielbasa , Branka Cajavec and Hanspeter Herzel

Institute for Theoretical Biology, Humboldt University Berlin, Invalidenstrasse 43, Berlin, D-10115, Germany

Received on March 28, 2003 ; revised on July 3, 2003 ; accepted on July 15, 2003

Summary:Homology Gene List (HOMGL) is a web-based tool for comparing gene lists with different accession numbers and identifiers and between different organisms. UniGene, LocusLink, HomoloGene and Ensembl databases are utilized to map between these lists and to retrieve upstream or transcribed sequences for genes in these lists. We illustrate the use of HOMGL with respect to microarray studies and promoter analysis.

Availability: http://homgl.biologie.hu-berlin.de/

Contact: nils.bluethgen{at}itb.biologie.hu-berlin.de

* To whom correspondence should be addressed.


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